GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:59:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MUC4LC1003_H06_.b_048. Musa acuminata leaves COLD stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN239317.1:183-202
CGTCACCGCACCAGAGTCCTCGACCATCGA183TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCTCCTCGCTTACAAAC
MA4LIMFES011B_r_MA4LIMFES011B_B06_.b1_045 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES011B_r_MA4LIMFES011B_B06_.b1_045 5', mRNA sequence.
JK533607.1:179-198
CGTCACCGCACCAGAGTCCTCGACCATCGA179TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCTCCTCGCTTACAAAC
MA4LIMFES014B_MA4LIMFES014B_F11_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES014B_MA4LIMFES014B_F11_.b 5', mRNA sequence.
JK533608.1:174-193
CGTCACCGCACCAGAGTCCTCGACCATCGA174TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCTCCTCGCTTACAAAC
MAC4-56F18 MA4LIMFES Musa acuminata cDNA clone MAC4-56F18 5', mRNA sequence.
JK533609.1:68-87
CGTCACCGCACCAGAGTCCTCGACCATCGA68TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCTCCTCGCTTACAAAC
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:37018383-37018402
CGTCACCGCACCAGAGTCATCGACCATCGA37018383TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCCTCGCTTACAAACTCCG
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:35841942-35841961
CGCCACCGCACCAGAGTCCTCGACCATCGA35841942TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCCTCGCTTACAAACTC
Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone cl491ct632cn683.
FM878773.1:176-195
CGTCACCGCACCAGAGTCCTCGACCATCGA176TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCTCCTCGCTTACAAAC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:36729596-36729615
CGCCACCGCACCAGAGTCCTCGACCATCGA36729596TTACAGCTCCTCCACCTCGTGAGTCTCTCTCTCTCCTAGCTTACAAACTC
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:40229806-40229825
CGGAGTTTGTAAGCGAGGAGAGAGAGACTC40229806ACGAGGTGGAGGAGCTGTAATCGATGGTCGATGACTCTGGTGCGGTGACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTACAGCTCCTCCACCTCGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACAGCTCCTCCACCTCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.487 | 0.478 | search_plus_done; http://172.18.8.135:50400/match?q=TTACAGCTCCTCCACCTCGT&k=0&no_gap=0&offset=0&limit=50
0.538 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAGGTGGAGGAGCTGTAA&k=0&no_gap=0&offset=0&limit=42
0.539 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).