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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:56:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH068_03113m, 5' end sequence.
AB450738.1:212-234
ATCCATACCATGAATGCAGCGAGTATTGCT212TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
Pyrus pyrifolia mRNA, clone: NFR2_01_13, 5' end sequence, expressed in fruit.
HX748430.1:211-233
ATCCATACCATGAATGCAGCGAGTATTGCT211TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
TSA: Pyrus pyrifolia mRNA, contig: contig_7352.
FX397727.1:241-263
ATCCATACCATGAATGCAGCGAGTATTGCT241TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
TSA: Pyrus communis mRNA, contig: lc28447.
FX636705.1:148-170
ATCCATACCATGAATGCAGCGAGTATTGCT148TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
TSA: Pyrus communis mRNA, contig: lc37849.
FX645396.1:12-34
CGAGTATTGCT12TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:17095324-17095346
ATCCATACCATGAATGCAGCGAGTATTGCT17095324TTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCT
TSA: Pyrus x bretschneideri Unigene21805_XinShao mRNA sequence.
JR615893.1:705-727
AGGATCTGATTGGATTTGAGGCATTCGAGC705CTTGGCTTCGGCAATAACTGTAAAGCAATACTCGCTGCATTCATGGTATGGAT
TSA: Pyrus x bretschneideri Unigene21806_XinShao mRNA sequence.
JR615894.1:738-760
AGGATCTGATTGGATTTGAGGCATTCGAGC738CTTGGCTTCGGCAATAACTGTAAAGCAATACTCGCTGCATTCATGGTATGGAT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:14985385-14985407
AGAATCTGATTGAATTTGAGGCATTCGAGC14985385CTTGGCTTCGGCAATAACTGTAAAGCAATACTCGCTGCATTCATGGTACGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTACAGTTATTGCCGAAGCCAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACAGTTATTGCCGAAGCCAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.265 | 0.257 | search_plus_done; http://172.18.8.135:50400/match?q=TTACAGTTATTGCCGAAGCCAAG&k=0&no_gap=0&offset=0&limit=50
0.397 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGGCTTCGGCAATAACTGTAA&k=0&no_gap=0&offset=0&limit=44
0.399 | 0.002 | cgi_end;

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