GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:39:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

63JKCOT5_T3_020_B02_22JAN2005_014 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021570.1:242-261
GTCATTACGACACGTGTAGTGGTATTATAT242TTACCCACCTTGGCTTCATCTTCCTTTCCGCCTATCTTCCTGGTCTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence.
AC189306.2:104504-104523
GTCATTACGACACGTGTAGTGGTATTATAT104504TTACCCACCTTGGCTTCATCTTCCTTTCCGCCTATCTTCCTGGTCTTTTC
Brassica napus microsatellite Y5F115-1 sequence.
JX131202.1:1-20
1TTACCCACCTTGGCTTCATCTTCCTTTTCGCCTATCTTCCTGGTCTTTTC
KBrB032C14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB032C14, genomic survey sequence.
DX034359.1:429-448
GAAAAGACCAGGAAGATAGGCGGAAAGGAA429GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
KBrB130H03R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130H03, genomic survey sequence.
ED537270.1:422-441
GAAAAGACCAGGAAGATAGGCGGAAAGGAA422GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH095B11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC241164.1:63368-63387
GAAAAGACCAGGAAGATAGGCGGAAAGGAA63368GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:9981746-9981765
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9981746GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa genome, scaffold: A03.
LR031572.1:9815699-9815718
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9815699GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:9938327-9938346
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9938327GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTACCCACCTTGGCTTCATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACCCACCTTGGCTTCATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.142 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=TTACCCACCTTGGCTTCATC&k=0&no_gap=0&offset=0&limit=50
0.218 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAAGCCAAGGTGGGTAA&k=0&no_gap=0&offset=0&limit=47
0.222 | 0.004 | cgi_end;

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