GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:25:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mddb5023I18_e2800.g1 Mddb Malus domestica cDNA 5', mRNA sequence.
GO566170.1:297-316
TAACCTCATCGACCTTTGAACTTCAAACGT297TTACGAACCATCGGACTTCATAATGGAAGCGTCTTCAATTGCTTTGGAGT
Mddb5003N19_e1178.g1 Mddb Malus domestica cDNA 5', mRNA sequence.
GO566764.1:314-333
TCGACCTTTGAACTTCGTTTTGTGAAACCT314TTACGAACCATCGGACTTCATCATGGAAGCGTCTTCAATTGCTTTGGAGT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:12468655-12468674
TCGACCTTTGAACTTCCTTTTGTGAAACCT12468655TTACGAACCATCGGACTTCATCATGGAAGCGTCTTCAATTGCTTTGGAGT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:12532707-12532726
TAACCTCATCGACCTTTGAACTTCAAACGT12532707TTACGAACCATCGGACTTCATAATGGAAGCGTCTTCAATTGCTTTGGAGT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:12458512-12458531
TCGACCTTTGAACTTCCTTTTGTGAAACCT12458512TTACGAACCATCGGACTTCATCATGGAAGCGTCTTCAATTGCTTTGGAGT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:12515120-12515139
TCGACCTTTGCACTTCCTTTTGTGAAACCT12515120TTACGAACCATCGGACTTCATCATGGAAGCGCCTTCAATTTCTTTGGAGT
Inachis io genome assembly, chromosome: 28.
LR989923.1:3996869-3996888
CGCCGTCCAACGCAAGGAAGTCCATCCAGC3996869TTACGAACCATCGGACTTCAGGAATGACGTTGCGCTAGTCCAACTTGACA
Eristalinus aeneus genome assembly, chromosome: 4.
OY019133.1:48304362-48304381
CGACTGATATTTACGAATTTTGAGTGTTAT48304362TTACGAACCATCGGACTTCATCTCATTTTACACACATGCTTAGGTTTTCC
Mddb5023i18.y1 Mddb Malus domestica cDNA clone Mddb5023i18 5', mRNA sequence.
CO903678.1:420-439
ACTCCAAAGCAATTGAAGACGCTTCCATTA420TGAAGTCCGATGGTTCGTAAACGTTTGAAGTTCAAAGGTCNATGAGGTTA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:19833500-19833519
ACTCCAAAGCAATTGAAGACGCTTCCATGA19833500TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAAGGAAGTTCAAAGGTCGA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:19983653-19983672
ACTCCAAAGCAATTGAAGACGCTTCCATTA19983653TGAAGTCCGATGGTTCGTAAACGTTTGAAGTTCAAAGGTCGATGAGGTTA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:19747847-19747866
ACTCCAAAGCAATTGAAGACGCTTCCATGA19747847TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAAGGAAGTTCAAAGGTCGA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:18157057-18157076
ACTCCAAAGCAATTGAAGACGCTTCCATGA18157057TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAACGAAGTTCAAAGGTCGA
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:19391027-19391046
ACTCCAAAGCAATTGAAGACGCTTCCATGA19391027TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAAGGAAGTTCAAAGGTCGA
Malus domestica genome assembly, chromosome: 12.
OU696688.1:19451453-19451472
GACTCCAAAGCAATTGAAGACGCTTCATGA19451453TGAAGTCCGATGGTTCGTAAAGGTTTTACAAAAGGAAGTTCAAAGGTCGA
Malus domestica genome assembly, chromosome: 12.
OU744553.1:19595739-19595758
ACTCCAAAGCAATTGAAGACGCTTCCATGA19595739TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAAGGAAGTTCAAAGGTCGA
Malus domestica genome assembly, chromosome: 12.
OU744964.1:19092274-19092293
GACTCCAAAGCAATTGAAGACGCTTCATGA19092274TGAAGTCCGATGGTTCGTAAAGGTTTTACAAAAGGAAGTTCAAAGGTCGA
Malus domestica genome assembly, chromosome: 12.
OU745002.1:19318753-19318772
ACTCCAAAGCAATTGAAGACGCTTCCATGA19318753TGAAGTCCGATGGTTCGTAAAGGTTTCACAAAACGAAGTTCAAAGGTCGA
Nymphalis polychloros genome assembly, chromosome: 28.
HG992269.1:3800239-3800258
TGTCAAGTTGGACAAGCGCGACGTCATTCC3800239TGAAGTCCGATGGTTCGTAAGCTGGATGGACTTCCTTGCGTTGGACCGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTACGAACCATCGGACTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACGAACCATCGGACTTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.395 | 0.387 | search_plus_done; http://172.18.8.135:50400/match?q=TTACGAACCATCGGACTTCA&k=0&no_gap=0&offset=0&limit=50
0.525 | 0.129 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGTCCGATGGTTCGTAA&k=0&no_gap=0&offset=0&limit=42
0.532 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).