GGGenome | Results

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2025-04-06 17:13:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Cs-EVI18 Differentially expressed cDNA libraries of tea plant responding to small green leafhopper feeding Camellia sinensis cDNA, mRNA sequence.
GH618823.1:359-379

CTGTAACAGGAATGAACTAAATGCAAGCTG359TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTAC

TSA: Camellia sinensis tea_rep_c5989 mRNA sequence.
KA285393.1:972-992

CTGTAACAGGAATGAACTAAATGCAAGCTG972TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTGCTCCCACCACATAA

TSA: Camellia sinensis tea_rep_c23168 mRNA sequence.
KA301596.1:92-112

CTGTAAGAGGAATAAACTAAATGTAAGCTG92TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTACTCCCATCACATAA

TSA: Camellia sinensis tea_s23638 mRNA sequence.
KA302032.1:91-111

CTGTAAGAGGAATAAACTAAATGTAAGCTG91TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTACTCCCATCACATAA

TSA: Camellia sinensis tea_rep_c23879 mRNA sequence.
KA302259.1:165-185

CTGTAACAGGAATGAACTAAATGCAAGCTG165TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTGCTCCCACCACATAA

TSA: Camellia sinensis tea_s24921 mRNA sequence.
KA303252.1:92-112

CTGTAAGAGGAATGAACTAAATGCAAGCTG92TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTACTCCCATCACATAA

TSA: Camellia sinensis tea_s25404 mRNA sequence.
KA303713.1:92-112

CTGTAAGAGGAATGAACTAAATGCAAGCTG92TTACGAGGAAAAAGCCGGCCATGGAAAGACCCCGGTACTCCCATCACATAA

Sequence 2 from patent US 6930227.
AR706376.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Sequence 3 from patent US 6930227.
AR706377.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Sequence 2 from Patent EP1055727.
AX138776.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Sequence 3 from Patent EP1055727.
AX138777.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

JP 2001037490-A/1: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD004678.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

JP 2001037490-A/2: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD004679.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

JP 2002085072-A/16: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD134668.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

JP 2002085072-A/17: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD134669.1:502-522

TTATGTGGTGGGAGTACCGGGGTCTTTCCA502TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

JP 2003088373-A/1: A Caffeine Synthase and A Gene thereof.
BD285420.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

JP 2003088373-A/2: A Caffeine Synthase and A Gene thereof.
BD285421.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Cs1.31 Camellia sinensis UPASI-10 suppression subtraction cDNA library Camellia sinensis cDNA similar to Caffeine synthase, mRNA sequence.
ES323511.1:408-428

CTATGTGGTGGGAGTACCGGGGTCTTTCCA408TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

CsSSHR225 Camellia sinensis winter dormancy suppression subtractive hybridization library Camellia sinensis cDNA similar to Theobromine synthase, mRNA sequence.
FE942998.1:16-36

ACCGGGGTCTTTCCA16TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Camellia sinensis mRNA, clone: LR14G01, 5' end sequence, expressed in lateral roots.
FS944396.1:533-553

TTATGTGATGGGAGTACCGGGGTCTTTCCA533TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia sinensis mRNA, clone: TB19D08, 5' end sequence, expressed in terminal buds.
FS955795.1:518-538

TTATGTGATGGGAGTACCGGGGTCTTTCCA518TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACA

Camellia sinensis mRNA, clone: TB26A01, 5' end sequence, expressed in terminal buds.
FS956230.1:383-403

TTATGTGATGGGAGTACCGGGGTCTTTCCA383TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia sinensis mRNA, clone: YL16C09, 5' end sequence, expressed in young leaves.
FS959723.1:480-500

TTATGTGATGGGAGTACCGGGGTCTTTCCA480TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

PA_T315_TRA_5402 Camellia assamica PA1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS391624.1:16-36

ACCGGGGTCTTTCCA16TGGCCGGCTTTTTCCTCGTAATAGCTTGCATTTAGTTCATTCCTGTTACAG

SKD_153_TRA_4865 Camellia assamica SKDCC1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS398211.1:15-35

GCGGGGTCTTTCCA15TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

S2_P5G5_013_TRA_3897 Camellia assamica S2 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS398763.1:16-36

ACCGGGGTCTTTCCA16TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

S5_P2F7_016_TRA_4477 Camellia assamica S5 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS399726.1:16-36

ACCGGGGTCTTTCCA16TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

Tea203_2006-01-17_1/Tea203_D05_021_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK475596.1:541-561

TTATGTGATGGGAGTACCGGGGTCTTTCCA541TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

LJSB202F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB202, mRNA sequence.
JZ485791.1:14-34

CGGGGTCTTTCCA14TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:561-581

TTATGTGATGGGAGTACCGGGGTCTTTCCA561TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

TSA: Camellia sinensis tea_rep_c1123 mRNA sequence.
KA280564.1:993-1013

TTATGTGATGGGAGTACCGGGGTCTTTCCA993TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:531-551

TTATGTGATGGGAGTACCGGGGTCTTTCCA531TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

TSA: Camellia sinensis tea_rep_c15113 mRNA sequence.
KA294360.1:453-473

TTATGTGGTGGGAGTACCGGGGTCTTTCCA453TGGCCGGCTTTTTCCTCGTAATAGCTTGCATTTAGTTCATTCCTGTTACAG

TSA: Camellia sinensis tea_rep_c22588 mRNA sequence.
KA301058.1:470-490

TTATGTGATGGGAGTACCGGGGTCTTTCCA470TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

TSA: Camellia sinensis tea_rep_c22700 mRNA sequence.
KA301161.1:441-461

TTATGTGGTGGGAGTACCGGGGTCTTTCCA441TGGCCGGCTTTTTCCTCGTAATAGCTTGCATTTAGTTCATTCCTGTTACAG

TSA: Camellia sinensis tea_rep_c24363 mRNA sequence.
KA302721.1:149-169

TTATGTGATGGGAGTACCGGGGTCTTTCCA149TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

TSA: Camellia sinensis tea_rep_c24596 mRNA sequence.
KA302947.1:259-279

TTATGTGATGGGAGTACCGGGGTCTTTCCA259TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

TSA: Camellia sinensis tea_s25772 mRNA sequence.
KA304063.1:158-178

TTATGTGATGGGAGTACCGGGGTCTTTCCA158TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

Camellia sinensis TCS1 mRNA for caffeine synthase, complete cds.
AB031280.1:509-529

TTATGTGATGGGAGTACCGGGGTCTTTCCA509TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia sinensis TCS2 mRNA for caffeine synthase, complete cds.
AB031281.1:502-522

TTATGTGGTGGGAGTACCGGGGTCTTTCCA502TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia irrawadiensis ICS1 mRNA for theobromine synthase, complete cds.
AB056108.1:479-499

TTATGTGATGGGAGTACCGGGGTCTTTCCA479TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Camellia irrawadiensis ICS2 mRNA for theobromine synthase, complete cds.
AB207816.1:415-435

TTATGTGGTGGGAGTACCGGGGTCTTTCCA415TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia ptilophylla PCS1 mRNA for theobromine synthase, complete cds.
AB207817.1:482-502

TTATGTGATGGGAGTACCGGGGTCTTTCCA482TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Camellia ptilophylla PCS2 mRNA for theobromine synthase, complete cds.
AB207818.1:415-435

TTATGTGGTGGGAGTACCGGGGTCTTTCCA415TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia granthamiana CgCS2 mRNA for theobromine synthase, complete cds.
AB362883.1:454-474

TTATGTGATGGGAGTACCGGGGTCTTTCCA454TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Camellia petelotii CcCS2 mRNA for theobromine synthase, complete cds.
AB362886.1:426-446

TTATGCGATGGGAGTACCGGGGTCTTTCCA426TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTACAG

Camellia sinensis caffeine synthase mRNA, complete cds.
AY907710.1:408-428

CTATGTGGTGGGAGTACCGGGGTCTTTCCA408TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia sinensis caffeine synthase gene, complete cds.
EF526217.1:4360-4380

TTATGTGATGGGAGTACCGGGGTCTTTCCA4360TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia sinensis cultivar Kangra jat caffeine synthase mRNA, partial cds.
FJ554589.1:332-352

TTATGTGGTGGGAGTACCGGGGTCTTTCCA332TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTG

Camellia sinensis caffeine synthase 2 (TCS2) gene, complete cds.
JX647691.1:4184-4204

TTATGTGGTGGGAGTACCGGGGTCTTTCCA4184TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:4004-4024

TTATGTGATGGGAGTACCGGGGTCTTTCCA4004TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTACAG

Camellia sinensis caffeine synthase 5 (TCS5) gene, complete cds.
JX647694.1:2142-2162

TTACGTGATGGGAGTACCGGGGTCTTTCCA2142TGGCCGGCTTTTTCCTCGTAACAGCTTGCGTTTAGTTCATTCCTGTTACAG

Camellia sinensis caffeine synthase 6 (TCS6) pseudogene, complete sequence.
JX647695.1:3378-3398

TTATGTGATGGGAGTACCGGTGTCTTTCCA3378TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTGTTTCAG

Camellia crassicolumna caffeine synthase mRNA, complete cds.
KT215398.1:420-440

TTATGTGATGGGAGTACCGGGGTCTTTCCA420TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia taliensis caffeine synthase mRNA, complete cds.
KT215399.1:420-440

TTATGTGATGGGAGTACCGGGGTCTTTCCA420TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTCATTCCTCTTACAG

Camellia sinensis var. assamica caffeine synthase (CkCS) mRNA, complete cds.
MN163829.1:420-440

TTATGTGATGGGAGTACCGGGGTCTTTCCA420TGGCCGGCTTTTTCCTCGTAACAGCTTACATTTAGTTTATTCCTCTTACAG

Camellia sinensis var. assamica theobromine synthase (CkTbS) mRNA, complete cds.
MN163830.1:423-443

TTATGTGATGGGAGTACCGGGGTCTTTCCA423TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCCTCTTATAG

Camellia sinensis var. assamica theacrine synthase (CkTcS) mRNA, complete cds.
MN163831.1:423-443

TTATGTGATGGGAGTACCAGGGTCTTTCCA423TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCGTCTTACAG

Camellia gymnogyna theacrine synthase (GCS1) mRNA, complete cds.
ON411345.1:423-443

TTATGTGATGGGAGTACCAGGGTCTTTCCA423TGGCCGGCTTTTTCCTCGTAACAGCTTGCATTTAGTTCATTCGTCTTACAG

Lithophane semibrunnea genome assembly, chromosome: 25.
OX376211.1:5051586-5051606

ACGTGTCCTTGTGTGACTCTGACTCGCTCT5051586TGGCCGGCTTTTTCCTCGTAAAACAATACACGGTCCCATAAAACATGCATA

Data Export:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTACGAGGAAAAAGCCGGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACGAGGAAAAAGCCGGCCA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.272 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=TTACGAGGAAAAAGCCGGCCA&k=0&no_gap=0&offset=0&limit=50
1.432 | 1.160 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCCGGCTTTTTCCTCGTAA&k=0&no_gap=0&offset=0&limit=43
1.468 | 0.036 | cgi_end;

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