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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-06 06:04:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens BAC clone RP11-760G15 from 2, complete sequence.
AC079807.5:98764-98783
AATAGTCAGGGCTCAGTAAACTGCTGGCCA98764TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:47959631-47959650
AATAGTCAGGGCTCAGTAAACTGCTGGCCA47959631TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:47919842-47919861
AATAGTCAGGGCTCAGTAAACTGCTGGCCA47919842TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:47930534-47930553
AATAGTCAGGGCTCAGTAAACTGCTGGCCA47930534TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:47941312-47941331
AATAGTCAGGGCTCAGTAAACTGCTGGCCA47941312TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Eukaryotic synthetic construct chromosome 2.
CP034498.1:48131013-48131032
AATAGTCAGGGCTCAGTAAACTGCTGGCCA48131013TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
Eukaryotic synthetic construct chromosome 2.
CP034523.1:48131013-48131032
AATAGTCAGGGCTCAGTAAACTGCTGGCCA48131013TTACTGTTACTGTTGGTGGTGGTGGTGGTAGTGTCATTTCAGGCTTTGAT
CABF6625.b1 CABF Amphimedon queenslandica released competant larvae Amphimedon queenslandica cDNA clone CABF6625 5', mRNA sequence.
GW134157.1:483-502
ATGCTGATCCTGCTATAACTGCTGATAACA483TTACTGTTACTGTTGGTGGTCAGTCGGTTAATTTTACTGCTTCTATTGAT
CAYI5837.b2 CAYI Amphimedon queenslandica competent larva (one day old) (L) Amphimedon queenslandica cDNA clone CAYI5837 5', mRNA sequence.
GW180395.1:463-482
ATGCTAATCCTGCTATAACTCGTGACAACA463TTACTGTTACTGTTGGTGGTCAGTCGGTTTATTTTACTGCTTCTATTGAT
CAYI5941.b2 CAYI Amphimedon queenslandica competent larva (one day old) (L) Amphimedon queenslandica cDNA clone CAYI5941 5', mRNA sequence.
GW180606.1:462-481
ATGCTGATCCTGCTATAACTGCTGATAACA462TTACTGTTACTGTTGGTGGTCAGTCGGTTAATTTTACTGCTTCTATTGAT
CAYI6808.b1 CAYI Amphimedon queenslandica competent larva (one day old) (L) Amphimedon queenslandica cDNA clone CAYI6808 5', mRNA sequence.
GW182193.1:464-483
ATGCTGATCCTGCTATAACTGCTGATAACA464TTACTGTTACTGTTGGTGGTCAGTTGGTTGATTTTACTGCTTCTATTGAT
TSA: Siraitia grosvenorii SIG_029925 mRNA sequence.
JL554103.1:1384-1403
CTGCCTTCCTAGAAAGGCCTCAACATAACT1384TTACTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCATGTGGAGGA
Exserohilum turcica Et28A chromosome 1.
CP054627.1:1607397-1607416
CAGGCGTCGTTGGCCTTGGCCTTGTTGTTA1607397TTACTGTTACTGTTGGTGGTGGTGTTGTTGTTGATAGGCGATAGCGCACA
Agrostemma githago genome assembly, chromosome: 2.
OY288240.1:2801274-2801293
AAAGGACGGTTGGTGTTACCGTTGTTGGGT2801274TTACTGTTACTGTTGGTGGTTGTTGCGGCGGTGGTTTTTCCGTTATTGTT
Erannis defoliaria genome assembly, chromosome: 20.
FR990086.1:8296117-8296136
AAATTGATTATTACTGTTAATAATAAACTG8296117TTACTGTTACTGTTGGTGGTTGTTGTTTGTTATTGTTATGTGTGTTAGTA
5_Tge_b3v08.
OE847863.1:15022-15041
ACCATTCCTACAACTTTTCGTGTTACTTCT15022TTACTGTTACTGTTGGTGGTATGGTGTATGGTGTATGGTGTATGCTAAAC
Sacculina carcini genome assembly, chromosome: 8.
OU696577.1:10079265-10079284
TCTCGAGCCACACCCGTGCTGTTACTGTTG10079265TTACTGTTACTGTTGGTGGTGTTGTTAGGCGTGCACGAGCTATCACTGAC
Platycheirus albimanus genome assembly, chromosome: 1.
OU696696.1:366377190-366377209
AGGGGGATTGACAATGGAAGGATTGGGTGG366377190TTACTGTTACTGTTGGTGGTGATTTGGTTCGGTAGGGGGGTGTTAAGAAA
Phyllotreta cruciferae genome assembly, chromosome: 1.
OU830606.1:12978131-12978150
CGGATAAATCGTTAGAATTGTTATATTACG12978131TTACTGTTACTGTTGGTGGTGGTTTGTTGTATTTGTATCTACCAAATTGG
Mus musculus castaneus genome assembly, chromosome: 7.
OW971841.1:104332451-104332470
CCACTACTCACCGTGACAGCACATCAACAA104332451ACCACCAACAGTAACAGTAAAGGCCAGCATCCAGTCAGCACTTGCTCTGT
WS00950.B21_M07 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00950_M07 3, mRNA sequence.
DR470479.1:321-340
GCCGCCGCCGCCGCCGCCGCCGCCACCACC321ACCACCAACAGTAACAGTAACAATACCACCATGGTTAATCAGAACCAGCA
CAYI5837.g4 CAYI Amphimedon queenslandica competent larva (one day old) (L) Amphimedon queenslandica cDNA clone CAYI5837 3', mRNA sequence.
GW180396.1:480-499
ATCAATAGAAGCAGTAAAATAAACCGACTG480ACCACCAACAGTAACAGTAATGTTGTCACGAGTTATAGCAGGATTAGCAT
CAYI5941.g4 CAYI Amphimedon queenslandica competent larva (one day old) (L) Amphimedon queenslandica cDNA clone CAYI5941 3', mRNA sequence.
GW180607.1:479-498
ATCAATAGAAGCAGTAAAATTAACCGACTG479ACCACCAACAGTAACAGTAATGTTATCAGCAGTTATAGCAGGATCAGCAT
Agrostemma githago genome assembly, chromosome: 5.
OY288243.1:74416457-74416476
TCAACTAACCCCTCTTTGACCAACAACACC74416457ACCACCAACAGTAACAGTAACAGTAACAGTAACAACAGTAACATGATGAG
Methanobrevibacter sp. TLL-48-HuF1 chromosome, complete genome.
CP081485.1:735248-735267
ACCATCAACAACAGCAACAGTGTAAGATTT735248ACCACCAACAGTAACAGTAACTACTCCTAAATCAACATTAGGAACAGCAA
Methanobrevibacter sp. TLL-48-HuF1 chromosome, complete genome.
CP081485.1:736295-736314
ACCATCAACAACAGCAACAGTGTAAGATTT736295ACCACCAACAGTAACAGTAACTACTCCTAAATCAACATTAGGAACAGCAA
Marthasterias glacialis genome assembly, chromosome: 21.
OU452239.1:6289306-6289325
TAAAAACTTACCAACAATATGACAAAATCA6289306ACCACCAACAGTAACAGTAACAGTAACAGTAACACTCAGGATGGAGGTAA
Anopheles aquasalis genome assembly, chromosome: 3.
OX030883.1:65134230-65134249
AACTCGTGACAAATCGACGGCTACAGCAAC65134230ACCACCAACAGTAACAGTAATAGCGGCCGACAGACAGCGACACTTCCTGT
Trichobilharzia regenti genome assembly, chromosome: Z.
OX235270.1:140039102-140039121
TGGAGACGGAAGGGATCAAGAAAACGGATT140039102ACCACCAACAGTAACAGTAACAACAACGAGAAACAATCACCATCAGCGGG
Hirtodrosophila cameraria genome assembly, chromosome: 1.
OX453089.1:22164877-22164896
AGTAACACCAACAACAACAACATCAACAAC22164877ACCACCAACAGTAACAGTAACACTAACATCAACAACAACAACAGCAACAA
Tachina grossa genome assembly, chromosome: 5.
OX465278.1:105888608-105888627
AGTACGGCCACTACCATCGTAACAACCAGC105888608ACCACCAACAGTAACAGTAACGTAAATCCTATTGGTCATTTACCAACATT
Linnaemya tessellans genome assembly, chromosome: 3.
OX637534.1:114450693-114450712
GCAACAACAACGGTAACAACTGTAACCAGC114450693ACCACCAACAGTAACAGTAATACAACCAATTCAGTACCAGCTGTTACAGC
Merodon equestris genome assembly, chromosome: 3.
OY284415.1:112294937-112294956
ACTAACCGAAATGAAACCGATCATAACACC112294937ACCACCAACAGTAACAGTAACAGTAGCAACAAAATCAACAACAGACACAA
Urophora cardui genome assembly, chromosome: 3.
OY482672.1:142755047-142755066
ACAAGCAATAAACAGCCAACAAGAACCACC142755047ACCACCAACAGTAACAGTAACACCACCGCCGCCGCCGCCGTACCTTCAAG
Hydrotaea diabolus genome assembly, chromosome: 4.
OY740719.1:175405307-175405326
TACCACTTTTTCCTTGCCGCCGTAACCACC175405307ACCACCAACAGTAACAGTAACCCCGTCCCCCAAATGCTTCGTGATTTGTT
Xanthorhoe designata genome assembly, chromosome: 18.
OY757048.1:7757304-7757323
CTAACTTACAGCCTGCTGCGGCATAGCTCT7757304ACCACCAACAGTAACAGTAACAACTCAGTTCACTGAAAAGTCAGGGCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTACTGTTACTGTTGGTGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTACTGTTACTGTTGGTGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.932 | 0.923 | search_plus_done; http://172.18.8.135:50400/match?q=TTACTGTTACTGTTGGTGGT&k=0&no_gap=0&offset=0&limit=50
1.263 | 0.331 | search_minus_done; http://172.18.8.135:50400/match?q=ACCACCAACAGTAACAGTAA&k=0&no_gap=0&offset=0&limit=31
1.274 | 0.011 | cgi_end;

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