GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:42:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Zea mays cultivar B73 chromosome 10 clone CH201-30P9, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC202964.4:151662-151681
TCTAGGTGAATCCTAGTTTGTTGAGTGAGT151662TTAGACAAACCACACAACCGCGTTTGTGTCACGGCCGCCACCGTGTACCG
Zea mays cultivar B73 chromosome 7 clone CH201-280J22, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces.
AC217437.5:117949-117968
TCTAGGTGAACCCTAGATTGTTGAGTGAGT117949TTAGACAAACCACACAACCGCTTGACTCTTGCGCGGGCCGTTGTAATTGT
Gossypium turneri isolate D10-2 chromosome D10_10.
CP032580.1:27453581-27453600
TAAATTGTGTTAGAATGGCCCCTAGGAAAG27453581TTAGACAAACCACACAACCGGAGGAATCAATAGATTTCGATTCCACCCGA
Zea mays genome assembly, chromosome: 7.
LR897973.1:171899325-171899344
TCTAGGTGAACCCTAGATTGTTGAGTGAGT171899325TTAGACAAACCACACAACCGCTTGACTCTTGCGCGGGCCGTTGTAATTGT
Zea mays genome assembly, chromosome: 10.
LR897976.1:76976553-76976572
TCTAGGTGAATCCTAGTTTGTTGAGTGAGT76976553TTAGACAAACCACACAACCGCGTTTGTGTCACGGCCGCCACCGTGTACCG
Sphaerophoria taeniata genome assembly, chromosome: 1.
OX016540.1:147985674-147985693
CAAAACACATGTATACACACAGAACGAAAA147985674TTAGACAAACCACACAACCGAATAAGCCATAGAAACATGATGTGAAAGAA
TSA: Cannabis sativa PK09364.1_1.CasaPuKu mRNA sequence.
JP449719.1:484-503
CGCAACAATAACAACAAGTAATTCTGTTTT484CGGTTGTGTGGTTTGTCTAAACCAATTTCAAGTACATGACACTTTAAAAT
Mycoplasma fermentans PG18 DNA, nearly complete genome.
AP009608.1:477506-477525
GCTGATTTATCAGCTTTCAATTCAACTTTA477506CGGTTGTGTGGTTTGTCTAAAAGAGTTATTATTTTAAATGAACGAGGTTT
Mycoplasma fermentans JER, complete genome.
CP001995.1:472478-472497
GCTGATTTATCAGCTTTCAATTCAACTTTA472478CGGTTGTGTGGTTTGTCTAAAAGAGTTATTATTTTAAATGAACGAGGTTT
Mycoplasma fermentans M64, complete genome.
CP002458.1:554162-554181
GCTGATTTATCAGCTTTCAATTCAACTTTA554162CGGTTGTGTGGTTTGTCTAAAAGAGTTATTATTTTAAATGAACGAGGTTT
Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11.
LR214965.1:28673-28692
GCTGATTTATCAGCTTTCAATTCAACTTTA28673CGGTTGTGTGGTTTGTCTAAAAGAGTTATTATTTTAAATGAACGAGGTTT
Mycoplasma conjunctivae strain NCTC10147 genome assembly, plasmid: 3.
LR214999.1:39081-39100
GCTGATTTATCAGCTTTCAATTCAACTTTA39081CGGTTGTGTGGTTTGTCTAAAAGAGTTATTATTTTAAATGAACGAGGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTAGACAAACCACACAACCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTAGACAAACCACACAACCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.154 | 0.146 | search_plus_done; http://172.18.8.135:50400/match?q=TTAGACAAACCACACAACCG&k=0&no_gap=0&offset=0&limit=50
0.212 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CGGTTGTGTGGTTTGTCTAA&k=0&no_gap=0&offset=0&limit=44
0.216 | 0.004 | cgi_end;

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