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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:10:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. pekinensis cultivar Inbred line Chiifu 401-402 clone KBrH1070K21, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
DQ369749.1:8894-8913
CGATGGTGAGGGCAAAAGGTGACGATGTAG8894TTAGCCTTGGAGCAAGTTGCGATGCTGGTTGGGTCGTCGTAAGCATAAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014P02, complete sequence.
AC172875.2:109450-109469
CGATGGTGAGGGCAAAAGGTGACGATGTAG109450TTAGCCTTGGAGCAAGTTGCGATGCTGGTTGGGTCGTCGTAAGCATAAGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7933.
FX707895.1:626-645
TCTTATGCTTACGACGACCCAACCAGCATC626GCAACTTGCTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCACCATCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18965.
FX773551.1:250-269
TCTTATGCTTACGACGACCCAACCAGCATC250GCAACTTGCTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCACCATCG
Brassica rapa subsp. chinensis BcPR5 mRNA for pathogenesis-related 5, complete cds.
AB458897.1:721-740
TCTTATGCTTACGACGACCCAACCAGCATC721GCAACTTGCTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCACCATCG
Brassica rapa subsp. chinensis pathogenesis-related 5 protein (PR5) mRNA, complete cds.
FJ605478.1:721-740
TCTTATGCTTACGACGACCCAACCAGCATC721GCAACTTGCTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCACCATCG
Brassica rapa pathogenesis-related group 5 protein (BFTP) mRNA, complete cds.
U71244.1:700-719
TCTTATGCTTACGACGACCCAACCAGCATC700GCAACTTGCTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCACCATCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTAGCCTTGGAGCAAGTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTAGCCTTGGAGCAAGTTGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.167 | 0.158 | search_plus_done; http://172.18.8.135:50400/match?q=TTAGCCTTGGAGCAAGTTGC&k=0&no_gap=0&offset=0&limit=50
0.254 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=GCAACTTGCTCCAAGGCTAA&k=0&no_gap=0&offset=0&limit=48
0.258 | 0.003 | cgi_end;

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