GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 20:54:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GD_TBa083C21.F GD_TBa Glycine dolichocarpa genomic 5', genomic survey sequence.
HN426505.1:250-267
TGTAGAAGAAAAAAAAGAAAGAGAGTTTTC250TTAGGAGGGAGTCTCGTGTTCTTATCTTAGGTTTGTGTCCCTCTGTGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:53427-53444
TTTGAGACAGATTTGAACCTCATAAGTGAT53427TTAGGAGGGAGTCTCGTGAGAATATCAATCATGAGATCAAAAGGAATC
Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:8801392-8801409
CTTGACACTGATTTGAACCTCATAAGGGAT8801392TTAGGAGGGAGTCTCGTGAGAATCTCTATCACGATATCAACAGGAATA
Alviniconcha strummeri genome assembly, chromosome: 6.
OY757546.1:21439608-21439625
ATAGAGGCGGAAATTAAAGAGCGGGCTCAC21439608TTAGGAGGGAGTCTCGTGCAGCAAGCCTGTTTTGTACTGATTTCCCAC
GT_DBa165D09.R GT_DBa Glycine tomentella genomic 3', genomic survey sequence.
HN660267.1:445-462
ACACAGAGGGACACAAACCTAAGATAAGAA445CACGAGACTCCCTCCTAAGAAAACTCTCTTTCTTTTTTTTCTTCTACA
GT_DBa042P09.R GT_DBa Glycine tomentella genomic 3', genomic survey sequence.
HN681251.1:227-244
ACACAGAGGGACACAAACCTAAGATAAGAA227CACGAGACTCCCTCCTAAGAAAACTCTCTTTCTTTTTTTTCTTCTACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:107401-107418
GATTCCTTTTGATCTCATGATTGATATTCT107401CACGAGACTCCCTCCTAAATCACTTATGAGGTTCAAATCTGTCTCAAA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24711242-24711259
GATTCCTTTTGATCTCATGATTGATATTCT24711242CACGAGACTCCCTCCTAAATCACTTATGAGGTTCAAATCTGTCTCAAA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24864558-24864575
GATTCCTTTTGATCTCATGATTGATATTCT24864558CACGAGACTCCCTCCTAAATCACTTATGAGGTTCAAATCTGTCTCAAA
Brassica rapa genome, scaffold: A03.
LR031572.1:24315659-24315676
GATTCCTTTTGATCTCATGATTGATATCCT24315659CACGAGACTCCCTCCTAAATCACTCATGAGGTTCAAATCTGTCTCAAA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24443533-24443550
GATTCCTTTTGATCTCATGATTGATATCCT24443533CACGAGACTCCCTCCTAAATCACTCATGAGGTTCAAATCTGTCTCAAA
Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:9068728-9068745
GATTCCTTTTGATATCGTGATAGAGATTCT9068728CACGAGACTCCCTCCTAAATCCCTTATGAGATTCAAATCAGTCTCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTAGGAGGGAGTCTCGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTAGGAGGGAGTCTCGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.141 | 0.133 | search_plus_done; http://172.18.8.135:50400/match?q=TTAGGAGGGAGTCTCGTG&k=0&no_gap=0&offset=0&limit=50
0.272 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=CACGAGACTCCCTCCTAA&k=0&no_gap=0&offset=0&limit=46
0.277 | 0.005 | cgi_end;

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