GGGenome | Results

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2025-04-09 11:02:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Capsicum annuum MGMT_Contig12349, mRNA sequence.
JW062593.1:522-541

CATTCGGAATAAATACTCTTTTAGCCAAGA522TTATGTGCACGGGTCTCAAAGTGACCTATATTTTTTATAAATAGTATACT

KS16037A05 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072875.1:140-159

AGTATACTATTTATAAAAAATATAGGTCAC140TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG

KS16045B07 KS16 Capsicum annuum cDNA, mRNA sequence.
GD073644.1:677-696

AGTATACTATTTATAAAAAATATAGGTCAC677TTTGAGACCCGTGCACATAAT

Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:255980689-255980708

AGTATACTATTTATAAAAAATATAGGTCAC255980689TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:255928974-255928993

AGTATACTATTTATAAAAAATATAGGTCAC255928974TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=TTATGTGCACGGGTCTCAAA&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.202 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGAGACCCGTGCACATAA&k=0&no_gap=0&offset=0&limit=49
0.325 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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