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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:50:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRCS04_2_008E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E11, mRNA sequence.
CV884621.1:169-188
CGCGTGTGACGCTGGCACCCTGCCCAACGG169TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
Citrus sinensis mRNA, clone: VS27V39, 5'-end sequence, expressed in seed.
DC900122.1:186-205
CGCGTGTGACGCTGGCACCCTGCCCAACGG186TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
UCRCA01_03O16_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0003O16, mRNA sequence.
DN623697.1:188-207
CGCGTGTGACGCTGGCACCCTGCCCAACGG188TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
Volcani_8_01_C11 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX448548.1:237-256
CGCGTGTGACGCTGGCACCCTGCCCAACGG237TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
CR05-C1-100-083-C02-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY765318.1:196-215
CGCGTGTGACGCTGGCACCCTGCCCAACGG196TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
IC0AAA13CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13CE09, mRNA sequence.
FC912829.1:199-218
CGCGTGTGACGCTGGTACCCTGCCCAACGG199TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
Citrus sinensis genome assembly, chromosome: 5.
OY754322.1:33239010-33239029
CGCGTGTGACGCTGGTACCCTGCCCAACGG33239010TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA
UCRCS04_2_008E11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E11, mRNA sequence.
CV884620.1:487-506
TTTTTGCTTCCACGTCGCCGTTTAGATGCT487CCACCTCCGCTTCGTAATAACCGTTGGGCAGGGTGCCAGCGTCACACGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTATTACGAAGCGGAGGTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTATTACGAAGCGGAGGTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.668 | 0.659 | search_plus_done; http://172.18.8.135:50400/match?q=TTATTACGAAGCGGAGGTGG&k=0&no_gap=0&offset=0&limit=50
0.792 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=CCACCTCCGCTTCGTAATAA&k=0&no_gap=0&offset=0&limit=43
0.792 | 0.001 | cgi_end;

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