GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:18:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 78 from Patent WO2006013072.
CS401581.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from Patent WO2006013072.
CS401582.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 5 from Patent WO2006089911.
CS409888.1:167-185
AATTATATTCCATCTTTAATTTGGCCCTTT167TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 78 from Patent EP2163635.
HC471042.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from Patent EP2163635.
HC471043.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 78 from Patent EP2166103.
HC476902.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from Patent EP2166103.
HC476903.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 78 from Patent EP2166104.
HC477707.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from Patent EP2166104.
HC477708.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 78 from patent US 8465915.
HJ230574.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from patent US 8465915.
HJ230575.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 78 from patent US 9133466.
HL197148.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Sequence 79 from patent US 9133466.
HL197149.1:227-245
AATTATATTCCATCTTTAATTTGGCCCTTT227TTATTATTCGCTATGGCCCAACATTTCAGGCCCAATTTATACGATTATA
Cyclobacterium marinum DSM 745, complete genome.
CP002955.1:1299179-1299197
TTTATGGCAAAATCATTCATCTTACCTGTA1299179TTATTATTCGCTATGGCCCGAACATTGATATTATCAATAGGGGCCGGAT
Cheilosia vulpina genome assembly, chromosome: 5.
OU744280.1:52862520-52862538
ACTATATAGCACATTTTATATATTTATTCG52862520TTATTATTCGCTATGGCCCTGTATTCGGTTCTTGAGAGTCTTTACAGAC
Astatotilapia calliptera genome assembly, chromosome: 4.
LS420022.2:6302188-6302206
GTCACTGAAGCAGAGGAACAGATTTGTCTT6302188GGGCCATAGCGAATAATAAATTCCCTCATATCCGATTGGCACTTTCTTT
Neolamprologus multifasciatus genome assembly, chromosome: 4.
OY755035.1:6931960-6931978
GTCACTGAAGCAGAGGAACAGATTTGTCTT6931960GGGCCATAGCGAATAATAAATTCCCTCATATCCGATTGGCACTTTCTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH108D17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241177.1:64455-64473
TATAATCGTATAAATTGGGCCTGAAATGTT64455GGGCCATAGCGAATAATAAAAAGGGCTTTTGAGGACAAATTAAAGATGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
AC189362.2:42592-42610
TATAATCGTATAAATTGGGCCTGAAATGTT42592GGGCCATAGCGAATAATAAAAAGGGCTTTTGAGGACAAATTAAAGATGG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:77498-77516
TATAATCGTATAAATTGGGCCTGAAATGTT77498GGGCCATAGCGAATAATAAAAAGGGCCAAATAAAAGATGGAATATAATT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:72344-72362
TATAATCGTATAAATTGGGCCTGAAATGTT72344GGGCCATAGCGAATAATAAAAAGGGCCAAATAAAAGATGGAATATAATT
Brassica rapa genome, scaffold: A03.
LR031572.1:93375-93393
TATAATCGTATAAATTGGGCCTGAAATGTT93375GGGCCATAGCGAATAATAAAAAGGGCTTTTGGAGGACAAATAAAAGATG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:93394-93412
TATAATCGTATAAATTGGGCCTGAAATGTT93394GGGCCATAGCGAATAATAAAAAGGGCTTTTGGAGGACAAATAAAAGATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTATTATTCGCTATGGCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTATTATTCGCTATGGCCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.681 | 0.673 | search_plus_done; http://172.18.8.135:50400/match?q=TTATTATTCGCTATGGCCC&k=0&no_gap=0&offset=0&limit=50
0.829 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=GGGCCATAGCGAATAATAA&k=0&no_gap=0&offset=0&limit=35
0.834 | 0.005 | cgi_end;

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