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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:28:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cyprinus carpio genome assembly, scaffold: LG21, chromosome: 21.
LN590682.1:6777883-6777902
GGTTTTGCGGTCCAGGGTCACATTTAAATT6777883TTATTTCCCAGAAATTGCACTGTACACATTACTATTATTATTATTATTTT
RPCI93-DpnII-28B14.TJ RPCI93-DpnII Trypanosoma brucei genomic clone RPCI93-DpnII-28B14, genomic survey sequence.
AQ646811.1:702-721
ACCTTCTCACCACCTTCCGTCTCATCCCAC702TTATTTCCCAGAAATTGCACTCGTTTGTACTCCCGCCCTGCTCATACCGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:37376253-37376272
GATCCAAAAGGCTGAAATCTTCTATCTTTT37376253TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:42024218-42024237
AATCCAAAAACCAGAAATTCTCTATCTTTT42024218TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:39748793-39748812
GATCCAAAAGGCTGAAATCTTCTATCTTTT39748793TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAACAAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:38758306-38758325
CGATCCAAAAACCAGAAATTCTCTATCTTT38758306TTATTTCCCAGAAATTGCACAATTTAATTACTGAAATTAAACAAAAAAAA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:35777889-35777908
GATCCAAAAGGCTGAAATCTTCTATCTTTT35777889TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:42365452-42365471
CAATCCAAAAACCAGAAATTCTCTATTTTT42365452TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:38454901-38454920
GATCCAAAAGGCTGAAATCTTCTATCTTTT38454901TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:41766461-41766480
AATCCAAAAACCAGAAATTCTCTATCTTTT41766461TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:38978266-38978285
GATCCAAAAGGCTGAAATCTTCTATCTTTT38978266TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:41199562-41199581
AATCCAAAAACCAGAAATTCTCTATCTTTT41199562TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:38684640-38684659
GATCCAAAAGGCTGAAATCTTCTATCTTTT38684640TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:41754696-41754715
CAATCCAAAAACCAGAAATTCTCTATTTTT41754696TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:42641428-42641447
AATCCAAAAACCAGAAATTCTCTATCTTTT42641428TTATTTCCCAGAAATTGCACAATTAATTACTGAAATTAAACAAAAAAAAA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:38478317-38478336
GATCCAAAAGGCTGAAATCTTCTATCTTTT38478317TTATTTCCCAGAAATTGCACCATCTATTTACAGAAATTAAACAAAAAAAA
Chenopodium album genome assembly, chromosome: 20.
OX419227.1:8592816-8592835
GAGCAGAGGTTGATGTCGATTATTATGGGA8592816TTATTTCCCAGAAATTGCACCTGATGACTATGAGAAGCTGCTTCGACCAG
Trypanosoma brucei gambiense DAL972 chromosome 8, complete sequence.
FN554971.1:931673-931692
ACCTTCTCACCACCTCCCGTCTCATCCCAC931673TTATTTCCCAGAAATTGCACTCGTTTGTACTCCCGCCCTGCTCATACCGT
Trypanosoma evansi genome assembly, chromosome: STIB805_09.
OU830659.1:1103292-1103311
ACCTTCTCACCACCTCCCGTCTCATCCCAC1103292TTATTTCCCAGAAATTGCACTCGTTTGTACTCCCGCCCTGCTCATACCGT
Protophormia terraenovae genome assembly, chromosome: 5.
OX596077.1:67134060-67134079
AAATATAATTTTTTATCTTTTCTGAAGTAT67134060TTATTTCCCAGAAATTGCACATAAAAATGTTATAAAAAAACGAAAATGAT
Eudasyphora cyanicolor genome assembly, chromosome: 4.
OZ005737.1:223987747-223987766
TAAATCCAGTGCAAAATATATTTTACTTCT223987747TTATTTCCCAGAAATTGCACTTTTATTGAAAATTTCCTAGAAATTGCAAT
Cyprinus carpio genome assembly, scaffold: LG18, chromosome: 18.
LN590684.1:5335238-5335257
AAAATAATAATAATAATAGTAATGTGTACA5335238GTGCAATTTCTGGGAAATAAAATTTAAATGTGACCCTGGACCGCAAAACC
Cyprinus carpio genome assembly, scaffold: 000028933.
LN596721.1:120630-120649
AAAATAATAATAATAATAGTAATGTGTACA120630GTGCAATTTCTGGGAAATAAAATTTAAATGTGACCCTGGACCGCAAAACC
Telmatherina bonti genome assembly, chromosome: 16.
OW121836.1:15380589-15380608
ACACCAATACACACATTTTAACCTGAAAAA15380589GTGCAATTTCTGGGAAATAAAACCCTTTAATGGTTGTAACTAAGGAGGCA
T. brucei sheared genomic DNA clone 389f05, reverse sequence.
AL498424.1:354-373
ACGGTATGAGCAGGGCGGGAGTACAAACGA354GTGCAATTTCTGGGAAATAAGTGGGATGAGACGGGAGGTGGTGAGAAGGT
Sheared DNA-30K1.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-30K1, genomic survey sequence.
AQ946061.1:375-394
ACGGTATGAGCAGGGCGGGAGTACAAACGA375GTGCAATTTCTGGGAAATAAGTGGGATGAGACGGGAGGTGGTGAGAAGGT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:4532071-4532090
TTTTTTTTTGTTTAATTTCAGTAATTAATT4532071GTGCAATTTCTGGGAAATAAAAAAGATAGAGAATTTCTGGTTTTTGGATT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:4770356-4770375
TTTTTTTCGGTTTAATTTCAGTAATTAATT4770356GTGCAATTTCTGGGAAATAAAAAAGATAGAGAATTTCTGGTTTTTGGATT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:4242095-4242114
TTTTTTTTTGTTTAATTTCAGTAATTAATT4242095GTGCAATTTCTGGGAAATAAAAAAGATAGAGAATTTCTGGTTTTTGGATT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4665908-4665927
TTTTTTTTTGTTTAATTTCAGTAATTAATT4665908GTGCAATTTCTGGGAAATAAAAAAGATAGAGAATTTCTGGTTTTTGGATT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:4417437-4417456
TTTTTTTTTGTTTAATTTCAGTAATTAATT4417437GTGCAATTTCTGGGAAATAAAAAAATAGAGAATTTCTGGTTTTTGGATTG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:3681046-3681065
TTGTTGTTGTTTAATTTCCGTAATTAAATT3681046GTGCAATTTCTGGGAAATAAAAAAGATAGAGAATTTCTGGTTTTTGGATC
Trypanosoma brucei isolate GUTat10.1 chromosome 8 clone RPCI93-10J17, complete sequence.
AC092212.32:93479-93498
ACGGTATGAGCAGGGCGGGAGTACAAACGA93479GTGCAATTTCTGGGAAATAAGTGGGATGAGACGGGAGGTGGTGAGAAGGT
Ischnura elegans genome assembly, chromosome: 8.
OV121108.1:24898244-24898263
CAATTTCTTTTAGCGTGGACATTAACCTTG24898244GTGCAATTTCTGGGAAATAATTATACGTTTCACGCCCCTTGCTGCTGTTA
Maratus speciosus genome assembly, chromosome: 12.
OZ010799.1:394347918-394347937
CTGTCGATTGATCAAAATAACTTTGTCATT394347918GTGCAATTTCTGGGAAATAAGAAAATTAGTCATTTCATAGGAAAATTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTATTTCCCAGAAATTGCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTATTTCCCAGAAATTGCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.208 | 0.199 | search_plus_done; http://172.18.8.135:50400/match?q=TTATTTCCCAGAAATTGCAC&k=0&no_gap=0&offset=0&limit=50
0.400 | 0.192 | search_minus_done; http://172.18.8.135:50400/match?q=GTGCAATTTCTGGGAAATAA&k=0&no_gap=0&offset=0&limit=29
0.409 | 0.009 | cgi_end;

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