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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 15:45:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

C19006C03T7 FlavFrSub1 Citrus clementina x Citrus tangerina cDNA clone C19006C03, mRNA sequence.
CX307420.1:103-122
TGTTTTTATTATTCAAAGTTTTTCAATTGC103TTATTTCCTTTGACGGTGGGGGTGGTTTGAATATACAATACAGTTTGCAC
C19006C05T7 FlavFrSub1 Citrus clementina x Citrus tangerina cDNA clone C19006C05, mRNA sequence.
CX307421.1:103-122
TGTTTTTATTATTCAAAGTTTTTCAATTGC103TTATTTCCTTTGACGGTGGGGGTGGTTTGAATATACAATACAGTTTGCAC
UCRCS11_01M02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M02, mRNA sequence.
DN617837.1:79-98
GTTTTTTATTATTCAAAGTTTTTCAATTGC79TTATTTCCTTTGACGGTGGGGGTGCTTTGAATATACAATACAGTTTGCAC
UCRCA01_03D13_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0003D13, mRNA sequence.
DN623232.1:80-99
GTTTTTTATTATTCAAAGTTTTTCAATTGC80TTATTTCCTTTGACGGTGGGGGTGCTTTGAATATACAATACAGTTTGCAC
IC0AAA42CA01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276930.1:297-316
TGTTTTTATTATTCAAAGTTTTTCAATTGC297TTATTTCCTTTGACGGTGGGGGTGGTTTGAATATACAATACAGTTTGCAC
IC0AAA42CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CA01, mRNA sequence.
FC914810.1:297-316
TGTTTTTATTATTCAAAGTTTTTCAATTGC297TTATTTCCTTTGACGGTGGGGGTGGTTTGAATATACAATACAGTTTGCAC
Dicyrtomina minuta genome assembly, chromosome: X1.
OX461809.1:2508566-2508585
ATTCAGGAGTAAGACCAACTGCATCATCAA2508566TTATTTCCTTTGACGGTGGGGAGAGGACGCTGTCAATGATGTAATGTGAC
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:10019029-10019048
GTACAAACTGTATTGTATATTCAAAGCACC10019029CCCACCGTCAAAGGAAATAAGCAATTGAAAAACTTTGAATAATAAAAACA
Dicyrtomina minuta genome assembly, chromosome: 1.
OX461808.1:153279481-153279500
GTCATGTGACCATATTGACAGCGTCCTCTC153279481CCCACCGTCAAAGGAAATAATTGATGCTGCAGTTGTTTTTACTACACTTG
Hydrotaea diabolus genome assembly, chromosome: 5.
OY740720.1:151474743-151474762
GGGTATACATTTACGCGTTGCTTTTTTAAT151474743CCCACCGTCAAAGGAAATAACCACCACCAACCAAGAGCCAGCCAAGCGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTATTTCCTTTGACGGTGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTATTTCCTTTGACGGTGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.325 | 0.316 | search_plus_done; http://172.18.8.135:50400/match?q=TTATTTCCTTTGACGGTGGG&k=0&no_gap=0&offset=0&limit=50
0.344 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CCCACCGTCAAAGGAAATAA&k=0&no_gap=0&offset=0&limit=43
0.346 | 0.002 | cgi_end;

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