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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 02:48:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:8708095-8708116
ATTAATTAATTAAGACAAGGACTCATCAAT8708095TTCAACCTTGACAATGGTATCGTCCTCAAACTTATCTTTCTTTGGGGGAGCC
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:8478679-8478700
ATTAATTAATTAAGACAAGGACTCATCAAT8478679TTCAACCTTGACAATGGTATCGTCCTCAAACTTATCTTTCTTTGGGGGAGCC
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:8659261-8659282
ATTAATTAATTAAGACAAGGACTCATCAAT8659261TTCAACCTTGACAATGGTATCGTCCTCAAACTTATCTTTCTTTGGGGGAGCC
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:6469616-6469637
GTTAATAAATTAAGACAAGGACTCATCAAT6469616TTCAACCTTGACAATGGTATCGTCCTCAAACTTATCTTTCTTTTGGGGAGCC
010425AASA006454HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA006454, mRNA sequence.
CN878934.1:326-347
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA326CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
010512AAWA002155HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA002155, mRNA sequence.
CN887475.1:325-346
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA325CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
010617AAWA008829HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA008829, mRNA sequence.
CN890067.1:325-346
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA325CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
010917AVBC040036PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC040036, mRNA sequence.
CN941387.1:353-374
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA353CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Mddb5010H08_e1655.g1 Mddb Malus domestica cDNA 5', mRNA sequence.
GO565987.1:79-100
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA79CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
TSA: Pyrus communis mRNA, contig: lc2118.
FX610705.1:364-385
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA364CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTTATTAAC
TSA: Pyrus communis mRNA, contig: lc7377.
FX615962.1:362-383
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA362CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTTATTAAC
TSA: Pyrus communis mRNA, contig: lc30649.
FX638811.1:274-295
CGGCTCCCCCAAAGAAGATAAGTTTGAGGA274CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAANTANAACGG
TSA: Pyrus x bretschneideri Unigene77439_XinShao mRNA sequence.
JR662452.1:434-455
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA434CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTTATTAAC
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:23458426-23458447
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23458426CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:23961228-23961249
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23961228CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:23708073-23708094
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23708073CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:22140060-22140081
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA22140060CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus baccata partial s31 gene for Putative 30S ribosomal protein, exons 1-3.
LM999992.1:505-526
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA505CGATACCATTGTCAAGGTTGAA
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:23834299-23834320
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23834299CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:23424949-23424970
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23424949CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:23908114-23908135
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23908114CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:23435132-23435153
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23435132CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:23049280-23049301
GGCTCCCCCAAAGAAAGATAAGTTTGAGGA23049280CGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAATTAATTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCAACCTTGACAATGGTATCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAACCTTGACAATGGTATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAACCTTGACAATGGTATCG&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.314 | search_minus_done; http://172.18.8.135:50400/match?q=CGATACCATTGTCAAGGTTGAA&k=0&no_gap=0&offset=0&limit=46
0.435 | 0.012 | cgi_end;

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