GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 01:45:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

40JKME7D_UP_026_D02_24MAY2004_010 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY016894.1:3-24
GA3TTCAAGAACGATCAAGAAGCAAGAAAGGAGTTTTCGGAAGAACAATCTCTTT
BNAPO1GH_T3_030_H12_15JUN2007_082 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR452911.1:74-95
ATAAATATTCCGACAACTTTTACCAAGGAA74TTCAAGAACGATCAAGAAGCAAGAAAGGAGTTTTCGGAAGAACAATCTCTTT
Brassica rapa subsp. pekinensis clone KBrH051D07, complete sequence.
FP340646.1:72047-72068
ATAAATATTCAGACAACTTTTACCAAGGAA72047TTCAAGAACGATCAAGAAGCAAGAAAGGAGTTTTCGGAAGAACAATCTCTTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21660606-21660627
AAAGAGATTGTTCTTCCGAAAACTCCTTTC21660606TTGCTTCTTGATCGTTCTTGAATTCCTTGGTAAAAGTTGTCTGAATATTTAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21649277-21649298
AAAGAGATTGTTCTTCCGAAAACTCCTTTC21649277TTGCTTCTTGATCGTTCTTGAATTCCTTGGTAAAAGTTGTCTGAATATTTAT
Brassica rapa genome, scaffold: A03.
LR031572.1:21463259-21463280
AAAGAGATTGTTCTTCCGAAAACTCCTTTC21463259TTGCTTCTTGATCGTTCTTGAATTCCTTGGTAAAAGTTGTCTGAATATTTAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21591320-21591341
AAAGAGATTGTTCTTCCGAAAACTCCTTTC21591320TTGCTTCTTGATCGTTCTTGAATTCCTTGGTAAAAGTTGTCTGAATATTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCAAGAACGATCAAGAAGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAAGAACGATCAAGAAGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.212 | 0.202 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAAGAACGATCAAGAAGCAA&k=0&no_gap=0&offset=0&limit=50
0.239 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCTTCTTGATCGTTCTTGAA&k=0&no_gap=0&offset=0&limit=47
0.241 | 0.003 | cgi_end;

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