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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:12:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Elaeis guineensis EST, clone (6lib)_isotig06379.
LM626943.1:403-426
ATTGAAGAAAGAAACTGTCTCCCTCTCTCA403TTCACTCTCCGCTCGTTGGTTCTTCTTTCTCTTTCTTGCTTGGAGTGGAAGTTG
OPYF00363 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 174-C2-T3.seq, mRNA sequence.
EL681299.1:530-553
CAACTTCCACTCCAAGCAAGAAAGAGAAAG530AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPYF00494 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 175-F4-T3.seq, mRNA sequence.
EL681422.1:529-552
CAACTTCCACTCCAAGCAAGAAAGAGAAAG529AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPMF00856 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 125-A04-T3.seq, mRNA sequence.
EL684618.1:497-520
CAACTTCCACTCCAAGCAAGAAAGAGAAAG497AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPMF01607 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6SG_S238.seq T3, mRNA sequence.
EL685368.1:497-520
CAACTTCCACTCCAAGCAAGAAAGAGAAAG497AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPMF01803 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6SG_S451.seq T3, mRNA sequence.
EL685563.1:175-198
CAACTTCCACTCCAAGCAAGAAAGAGAAAG175AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPVM00068 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 82-F10-T3.seq, mRNA sequence.
EL686464.1:404-427
CAACTTCCACTCCAAGCAAGAAAGAGAAAG404AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPVM00371 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 85-H09-T3.seq, mRNA sequence.
EL686765.1:403-426
CAACTTCCACTCCAAGCAAGAAAGAGAAAG403AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
OPVM01009 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_B50-1W.seq, mRNA sequence.
EL687387.1:511-534
CAACTTCCACTCCAAGCAAGAAAGAGAAAG511AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EAP03716_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP03716 5', mRNA sequence.
EY406303.1:67-90
CAACTTCCACTCCAAGCAAGAAAGAGAAAG67AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EAP01031_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01031 5', mRNA sequence.
EY406520.1:124-147
CAACTTCCACTCCAAGCAAGAAAGAGAAAG124AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EAP01296_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01296 5', mRNA sequence.
EY407156.1:75-98
CAACTTCCACTCCAAGCAAGAAAGAGAAAG75AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EAP01861_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01861 5', mRNA sequence.
EY407764.1:133-156
CAAGTTCCACTTCAAGCAAGAAAGAGAATG133AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EAP01310_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01310 5', mRNA sequence.
EY407765.1:159-182
CAACTTCCACTCCAAGCAAGAAAGAGAAAG159AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
pOP-EO02011_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02011 5', mRNA sequence.
EY413316.1:289-312
CAACTTCCACTCCAAGCAAGAAAGAGAAAG289AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
Contig33 DEGdwarf cDNA library from oil palm spear leaves Elaeis guineensis cDNA clone Contig33, mRNA sequence.
JZ905543.1:387-410
CAACTTCCACTCCAAGCAAGAAAGAGAAAG387AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
TSA: Elaeis guineensis isotig01569.Elguifruit mRNA sequence.
JO088822.1:534-557
CAACTTCCACTCCAAGCAAGAAAGAGAAAG534AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT
Elaeis guineensis putative dormancy/auxin associated protein (DRM) mRNA, complete cds.
KC146057.1:1343-1366
CAACTTCCACTCCAAGCAAGAAAGAGAAAG1343AAGAACCAACGAGCGGAGAGTGAATGAGAGAGGGAGACAGTTTCTTTCTTCAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCACTCTCCGCTCGTTGGTTCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCACTCTCCGCTCGTTGGTTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=TTCACTCTCCGCTCGTTGGTTCTT&k=0&no_gap=0&offset=0&limit=50
1.068 | 0.876 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAACCAACGAGCGGAGAGTGAA&k=0&no_gap=0&offset=0&limit=49
1.079 | 0.011 | cgi_end;

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