GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:19:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Psittacula echo genome assembly, chromosome: 5.
OY725425.1:71785610-71785629
GCATTTATCTCCAAGAAAATCTAGGAAGGT71785610TTCACTTAAAGCCTGACCCTTTGTTATCAGTTTGACACATGCTCTATGGC
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:844349617-844349636
ACAAGTGACCCTCAGGGGAACTCGTGACTT844349617TTCACTTAAAGCCTGACCCTCTTGGAGGAGCAATTGCTCGCGGGTCAGAG
Brassica campestris fae1 gene, low erucic acid line.
Y14974.1:1362-1381
GAAAGGTAATAAAGTTTGGCAGATTGCTTT1362AGGGTCAGGCTTTAAGTGAAACAGTGCGGGC
Brassica campestris fae1 gene, high erucic acid line.
Y14975.1:1359-1378
GAAAGGTAATAAAGTTTGGCAGATTGCTTT1359AGGGTCAGGCTTTAAGTGAAACAGTGCGGGC
Brassica oleracea fae1 gene.
Y14981.1:1362-1381
GAAAGGTAATAAAGTTTGGCAGATTGCTTT1362AGGGTCAGGCTTTAAGTGAAACAGTGCGGGCGGATCCCCCGGGCTGCAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCACTTAAAGCCTGACCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCACTTAAAGCCTGACCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.334 | 0.325 | search_plus_done; http://172.18.8.135:50400/match?q=TTCACTTAAAGCCTGACCCT&k=0&no_gap=0&offset=0&limit=50
0.415 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGTCAGGCTTTAAGTGAA&k=0&no_gap=0&offset=0&limit=48
0.417 | 0.002 | cgi_end;

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