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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 15:47:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ovis canadensis canadensis isolate 43U chromosome 11 sequence.
CP011896.1:21675833-21675852
GGAAGAGAAAGGAGCATTTTCAGAGATGCA21675833TTCACTTGGCTCAGCCTCTTAAGKCCTGGCAGTGTGTGGATAAGCACATA
Ovis canadensis canadensis isolate 43U chromosome 22 sequence.
CP011907.1:36209371-36209390
CACCAGTCACATCCACAACTGAGCACTGTT36209371TTCACTTGGCTCAGCCTCTTCATTCCTTCTGGAGCTATTTCTCTGCTCTT
Capricornis sumatraensis isolate serow.1 chromosome 8.
CP135634.1:72445549-72445568
GGAAGAGAAAGGAGCATTTTCAGAGATGCA72445549TTCACTTGGCTCAGCCTCTTAAGGCCTGGCAGTGTGTGGATAAGCACATA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 25.
OX596109.1:15698323-15698342
CACCAGTCACATCCTCAACTGGGCTTTGTG15698323TTCACTTGGCTCAGCCTCTTCATTCTTTCTAGACCTATTTCTCCACTGTT
GM880022A20D01 Gm-r1088 Glycine max cDNA clone Gm-r1088-8210 3', mRNA sequence.
BU548424.1:317-336
GGTGCTTTCTTCTTCAGAGTTTCGGGTGTC317TTCACTTGGCTCAGCCTCTTAATCTTCTCACCCACCTTCTTCTTCTTCTT
CCCC7526.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC7526 3', mRNA sequence.
GR834784.1:366-385
GGTGCTTTCTTCTTCAGAGTTTCGGGTGTC366TTCACTTGGCTCAGCCTCTTAATCTTCTCACCCACCTTCTTCTTCTTCTT
GS_Ba088F24.R GS_Ba Glycine syndetika genomic 3', genomic survey sequence.
HN803090.1:681-700
GGTGCTTTCTTCTTCAGAGCTTCGGGTGTC681TTCACTTGGCTCAGCCTCTTAATCTTCTCACCCTCCTTCTTCTTCTTTTT
Bos taurus clone CH240-155J2, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC150667.5:85616-85635
CACCAGTCACATCCTCAACTGGGCTTTGTT85616TTCACTTGGCTCAGCCTCTTCATTCTTTCTAGAGCTATTTCTCCACTGTT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-240M23.
FP102324.2:179470-179489
CTATTTGAGAAGCATAGTCTGGCAGACTTT179470TTCACTTGGCTCAGCCTCTTGATACCCTGACCTCAGTGGTGTTAAGCAAA
Antiaris toxicaria isolate JCLG002 chromosome 9.
CP141161.1:18980839-18980858
GCAATGGGATCAACAGATACACAGGGGAAA18980839TTCACTTGGCTCAGCCTCTTGGGCATTTAACTGAACTACGTATTATACAA
Antiaris toxicaria isolate JCLG002 chromosome 9.
CP141174.1:18431627-18431646
AGGCAATGGGATCAACAGATACACGGGAAA18431627TTCACTTGGCTCAGCCTCTTGGGCATTTAACTGAACTACGTATTATACAA
Mus spretus genome assembly, chromosome: 9.
OW971688.1:105741728-105741747
CAGATGTAAACACTTGTACTCTCAGAGCTG105741728AAGAGGCTGAGCCAAGTGAATTCCTGGGGTTCTCTTGCCAGCCAGTTCAC
Bos mutus isolate yakQH1 chromosome 1.
CP027069.1:52155205-52155224
AAGAGTGGAGAAATAGCTCCAGAAAAAATG52155205AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Sus scrofa scrofa breed NS chromosome 1.
CP071552.1:21237464-21237483
TTTGCTTAACACCACTGAGGTCAGGGTATC21237464AAGAGGCTGAGCCAAGTGAAAAAGTCTGCCAGACTATGCTTCTCAAATAG
Bos taurus genome assembly, chromosome: 1.
LR962739.1:53221983-53222002
AAGAGTGGAGAAATAGCTCCAGAAAAAATG53221983AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Bos taurus genome assembly, chromosome: 5.
LR962763.1:41418721-41418740
AACAGTGGAGAAATAGCTCTAGAAAGAATG41418721AAGAGGCTGAGCCAAGTGAAAACAAAGCCCAGTTGAGGATGTGACTGGTG
Bos taurus genome assembly, chromosome: 1.
LR962864.1:52067147-52067166
AAGAGTGGAGAAATAGCTCCAGAAAAAATG52067147AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Bos taurus genome assembly, chromosome: 5.
LR962888.1:41035770-41035789
AACAGTGGAGAAATAGCTCTAGAAAGAATG41035770AAGAGGCTGAGCCAAGTGAAAACAAAGCCCAGTTGAGGATGTGACTGGTG
Cervus elaphus genome assembly, chromosome: 3.
OU343080.1:39935781-39935800
TACTCGAGAACAGTGGAGAAATAGATCTAG39935781AAGAGGCTGAGCCAAGTGAACACAAAGCCCAGTTGAGGATGTGACTGGTG
Cervus elaphus genome assembly, chromosome: 14.
OU343091.1:21666983-21667002
AAGAGTGGAGAAATAACTCCAGAAAGAATG21666983AAGAGGCTGAGCCAAGTGAAAACAATACTCAGTTGTGGATGTGACTGGTG
Bos gaurus x Bos taurus genome assembly, chromosome: 1.
OX258955.1:52649833-52649852
AAGAGTGGAGAAATAGCTCCAGAAAAAATG52649833AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Bos gaurus x Bos taurus genome assembly, chromosome: 5.
OX258959.1:41107652-41107671
AACAGTGGAGAAATAGCTCTAGAAAGAATG41107652AAGAGGCTGAGCCAAGTGAAAACAAAGCCCAGTTGAGGATGTGACTGGTG
Bos taurus strain mammals genome assembly, chromosome: 1.
OX344690.1:53865149-53865168
AAGAGTGGAGAAATAGCTCCAGAAAAAATG53865149AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Bos taurus strain mammals genome assembly, chromosome: 5.
OX344694.1:45341798-45341817
AACAGTGGAGAAATAGCTCTAGAAAGAATG45341798AAGAGGCTGAGCCAAGTGAAAACAAAGCCCAGTTGAGGATGTGACTGGTG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 9.
OX459945.2:22171809-22171828
AAGAGTGGAGAAATAACTCCAGAAAGAATG22171809AAGAGGCTGAGCCAAGTGAAAACAATATTCAGTTGTGGATGTGACTGGTG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 27.
OX459963.2:41612545-41612564
AACAGTGGAGAAATAGGTCTAGAAAGAATG41612545AAGAGGCTGAGCCAAGTGAACACAAAGCCCAGTTGAGGATGTGACTGGTG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 9.
OX596093.1:19862552-19862571
AAGAGTGGAGAAATAACTCCAGAAAGAATG19862552AAGAGGCTGAGCCAAGTGAAAACAATATTCAGTTGTGGATGTGACTGGTG
Sus scrofa genome assembly, chromosome: 1.
OY997208.1:20867049-20867068
TTTGCTTAACACCACTGAGGTCAGGGTATC20867049AAGAGGCTGAGCCAAGTGAAAAAGTCTGCCAGACTATGCTTCTCAAATAG
Bos taurus genome assembly, chromosome: Bta01.
OY997229.1:57111799-57111818
AAGAGTGGAGAAATAGCTCCAGAAAAAATG57111799AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Bos taurus genome assembly, chromosome: Bta05.
OY997233.1:43999880-43999899
AACAGTGGAGAAATAGCTCTAGAAAGAATG43999880AAGAGGCTGAGCCAAGTGAAAACAAAGCCCAGTTGAGGATGTGACTGGTG
Muntiacus reevesi genome assembly, chromosome: 2.
OZ005625.1:91841624-91841643
AAGAGTGGAGAAATAGCTCCAGAAGGAATG91841624AAGAGGCTGAGCCAAGTGAAAACAATGCCCAGTTGATGTGACTGGTGATG
Muntiacus reevesi genome assembly, chromosome: 4.
OZ005627.1:156292206-156292225
AACAGTGGAGAAATAGATCTAGAAAGAATG156292206AAGAGGCTGAGCCAAGTGAACACAAAGCCCAGTTGAGGATGTGACTGGTG
Sequence 4708 from Patent EP2148885.
HI533736.1:51-70
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT51AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
Sequence 4708 from patent US 9271455.
HL707071.1:51-70
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT51AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
sac77h10.y1 Gm-c1072 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1072-1531 5' similar to SW:H1_MAIZE P23444 HISTONE H1, mRNA sequence.
BG510451.1:381-400
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT381AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
GLLBM83TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
EV267765.1:389-408
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT389AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
GLPAT89TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FK002729.1:397-416
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT397AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
454GmaGlobSeed578094 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD835445.1:64-83
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT64AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
CCCC7526.b1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC7526 5', mRNA sequence.
GR834783.1:50-69
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT50AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
ocpsga0_0053_D05.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO012678.1:426-445
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT426AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGA
Rattus norvegicus clone CH230-46L16, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC099122.5:167646-167665
TACAGTGGCACACATGAACACTCAGAGCAG167646AAGAGGCTGAGCCAAGTGAATTCTTCGGGTTCTCTTGCCGGGCAGTTCAC
Bos taurus clone CH240-193C3, WORKING DRAFT SEQUENCE, 20 unordered pieces.
AC167339.3:133166-133185
AAGAGTGGAGAAATAGCTCCAGAAAAAATG133166AAGAGGCTGAGCCAAGTGAAAACAACACACAGCTGTGAATGTGACTGGTG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-52C17.
CU914289.2:27423-27442
TTTGCTTAACACCACTGAGGTCAGGGTATC27423AAGAGGCTGAGCCAAGTGAAAAAGTCTGCCAGACTATGCTTCTCAAATAG
Soybean clone JCVI-FLGm-3H2 unknown mRNA.
BT090173.1:389-408
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT389AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC
Glycine max cultivar Williams 82 chromosome 2.
CP126427.1:1341029-1341048
AAGAAGAAGAAGAAGGTGGGTGAGAAGATT1341029AAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCACTTGGCTCAGCCTCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCACTTGGCTCAGCCTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.297 | 1.289 | search_plus_done; http://172.18.8.135:50400/match?q=TTCACTTGGCTCAGCCTCTT&k=0&no_gap=0&offset=0&limit=50
2.353 | 1.056 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAGGCTGAGCCAAGTGAA&k=0&no_gap=0&offset=0&limit=39
2.375 | 0.022 | cgi_end;

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