GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 10:53:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rana temporaria genome assembly, chromosome: 2.
LR991681.1:465516106-465516125
TTCAAGTAGAACTATAGACAAAACTTTTTT465516106TTCACTTTGGATAGAGCAGGGAAGGGTTATAACCCCTATTAGATTTTTGT
Trifolium repens mRNA, clone: WCC05b17_066, unspecified EST.
FY455747.1:369-388
ATCAAGAAATTTGAAGATGGTGAAACAGAG369TTCACTTTGGATAGAGCAGGACCATTTTATTTCATCAGTGGAAAAGATGA
Trifolium repens mRNA, clone: WCC22b19_002, unspecified EST.
FY461696.1:349-368
ATCAAGAAATTTGAAGATGGTGAAACAGAG349TTCACTTTGGATAGAGCAGGACCATTCTATTTCATCAGTGGAAAAGATGA
Trifolium repens mRNA, clone: WCC25k12_093, unspecified EST.
FY462973.1:241-260
ATCAAGAAATTTGAAGATGGTGAAACAGAG241TTCACTTTGGATAGAGCAGGGCCATTCTATTTCATCAGTGGAAAAGATGA
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:19766148-19766167
TCATCTTTTCCACTGATGAAATAAAATGGT19766148CCTGCTCTATCCAAAGTGAACTCTGTTTCACCATCTTCAAATTTCTTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCACTTTGGATAGAGCAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCACTTTGGATAGAGCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.357 | 0.349 | search_plus_done; http://172.18.8.135:50400/match?q=TTCACTTTGGATAGAGCAGG&k=0&no_gap=0&offset=0&limit=50
0.373 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGCTCTATCCAAAGTGAA&k=0&no_gap=0&offset=0&limit=46
0.374 | 0.001 | cgi_end;

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