GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 10:10:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Balaenoptera acutorostrata genome assembly, chromosome: 15.
OX465365.1:18925512-18925531
TGGCTGGGCAAAGCGAGGAGTATGAAATCT18925512TTCAGAATCTTGGAGAAGGCCACACTCATGAAGGATTTTATCCTTATCTG
Sequence 1587 from Patent WO2008034648.
FB782314.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 7510 from Patent WO2008034648.
FB788237.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 28564 from Patent WO2008034648.
FB809291.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 35682 from Patent WO2008034648.
FB816409.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 39467 from Patent WO2008034648.
FB820194.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 43257 from Patent WO2008034648.
FB823984.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 46432 from Patent WO2008034648.
FB827159.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 64992 from Patent WO2008034648.
FB845719.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 76148 from Patent WO2008034648.
FB856875.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 84738 from Patent WO2008034648.
FB865465.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 93615 from Patent WO2008034648.
FB874342.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 103535 from Patent WO2008034648.
FB884262.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 109558 from Patent WO2008034648.
FB890285.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 111601 from Patent WO2008034648.
FB892328.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 114916 from Patent WO2008034648.
FB895643.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 117160 from Patent WO2008034648.
FB897887.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 1587 from Patent EP2090662.
HB652373.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 7510 from Patent EP2090662.
HB658296.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 28564 from Patent EP2090662.
HB679350.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 35682 from Patent EP2090662.
HB686468.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 39467 from Patent EP2090662.
HB690253.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 43257 from Patent EP2090662.
HB694043.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 46432 from Patent EP2090662.
HB697218.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 64992 from Patent EP2090662.
HB715778.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 76148 from Patent EP2090662.
HB726934.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 84738 from Patent EP2090662.
HB735524.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 93615 from Patent EP2090662.
HB744401.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 103535 from Patent EP2090662.
HB754321.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 109558 from Patent EP2090662.
HB760344.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 111601 from Patent EP2090662.
HB762387.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 114916 from Patent EP2090662.
HB765702.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 117160 from Patent EP2090662.
HB767946.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sequence 152783 from Patent EP2090662.
HB803569.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Mus musculus targeted non-conditional, lacZ-tagged mutant allele Mak16:tm1e(EUCOMM)Hmgu; transgenic.
JN945877.1:36398-36417
TGTCCTGATGACTTTGGGCGGCTGAGACGG36398TTCAGAATCTTGGAGAAGGCTGGTTCGAGGGCCGGGGGAGAGCCCTCTGC
Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Mak16:tm1a(EUCOMM)Hmgu; transgenic.
JN961610.1:36385-36404
TGTCCTGATGACTTTGGGCGGCTGAGACGG36385TTCAGAATCTTGGAGAAGGCTGGTTCGAGGGCCGGGGGAGAGCCCTCTGC
Brassica napus isolate mutant Cr3529 clone Bncr17 unknown mRNA.
DQ068125.1:88-107
CTGTGGTGCGTGATGTTGAGCTTGATGTGT88TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Brassica napus mutant Cr3529 unknown protein Cr17 mRNA, complete cds.
AY952464.1:1079-1098
CTGTGATGCGTGATGTTGAGCTTGATGTGT1079TTCAGAATCTTGGAGAAGGCTCGACCAACTTTAGACTGTTGGACACGACA
Sepia lycidas genome assembly, chromosome: 7.
OZ010577.1:70761423-70761442
TAGCCAGTCGAATAGAAAGACAAATTTGAA70761423TTCAGAATCTTGGAGAAGGCAATTAGATTGTATTTTGAAGATATCGTGTT
Mus musculus chromosome 8, clone RP24-174F12, complete sequence.
AC109163.16:135406-135425
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA135406GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus cDNA sequence BC019943, mRNA (cDNA clone MGC:28346 IMAGE:4017819), complete cds.
BC019943.2:303-322
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA303GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971571.1:26707697-26707716
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26707697GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971582.1:26744163-26744182
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26744163GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971603.1:26986730-26986749
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26986730GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus domesticus genome assembly, chromosome: 8.
OW971629.1:27482374-27482393
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA27482374GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971645.1:26762152-26762171
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26762152GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus molossinus genome assembly, chromosome: 8.
OW971665.1:34368575-34368594
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA34368575GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971716.1:25957035-25957054
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA25957035GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971729.1:26722127-26722146
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26722127GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971750.1:27215120-27215139
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA27215120GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele BC019943:tm1a(KOMP)Wtsi; transgenic.
JN960665.1:12971-12990
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA12971GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
ml39c06.r1 Stratagene mouse testis (#937308) Mus musculus cDNA clone IMAGE:514378 5', mRNA sequence.
AA061178.1:66-85
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA66GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
ml39c06.y1 Stratagene mouse testis (#937308) Mus musculus cDNA clone IMAGE:514378 5', mRNA sequence.
AI595144.1:67-86
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA67GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630003M24, 5' end partial sequence.
BB628419.1:619-638
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA619GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCA
601331551F2 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:3709045 5', mRNA sequence.
BE573110.1:347-366
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA347GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
601776112F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:4017819 5', mRNA sequence.
BF169128.1:302-321
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA302GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
603381815F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:5387714 5', mRNA sequence.
BI854842.1:375-394
AGAAGGGCTCTACCCCCGGCCCTCGAACCA375GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
UI-M-FI0-byu-c-24-0-UI.r1 NIH_BMAP_FI0 Mus musculus cDNA clone IMAGE:5702351 5', mRNA sequence.
BQ771425.1:101-120
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA101GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0218F08-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0218F08 IMAGE:30012355 5', mRNA sequence.
CA535455.1:178-197
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA178GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0224G11-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0224G11 IMAGE:30012946 5', mRNA sequence.
CA535832.1:68-87
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA68GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0225B06-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0225B06 IMAGE:30012977 5', mRNA sequence.
CA535849.1:67-86
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA67GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0226D09-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0226D09 IMAGE:30013100 5', mRNA sequence.
CA535933.1:180-199
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA180GCCTTCTCCAAGATTCTGAACCGTGTCAGCCGCCCAAAG
Mus musculus HCM2122 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence.
AY405134.1:82-101
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA82GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230112G15 product:hypothetical ARM repeat structure containing protein, full insert sequence.
AK045392.1:621-640
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA621GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230336D21 product:hypothetical ARM repeat structure containing protein, full insert sequence.
AK046031.1:606-625
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA606GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230012M13 product:SIMILAR TO HYPOTHETICAL PROTEIN FLJ23263 homolog [Mus musculus], full insert sequence.
AK084242.1:606-625
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA606GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Lumbricus terrestris genome assembly, chromosome: 9.
OX457044.1:30261042-30261061
ACCCGTTTTCGTTGGGTCGCCCAACTTTCC30261042GCCTTCTCCAAGATTCTGAATTCCCTCTAAGTCCGTCTTCTTAAAGGATT
Thysanoteuthis rhombus genome assembly, chromosome: 1.
OY735198.1:45692427-45692446
CTTAGAGGAATGGTGGAGTGATTCCCTGTT45692427GCCTTCTCCAAGATTCTGAATTCAGAGTTGTCCTTCTCGTTAACTGGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCAGAATCTTGGAGAAGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAGAATCTTGGAGAAGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.601 | 0.592 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAGAATCTTGGAGAAGGC&k=0&no_gap=0&offset=0&limit=50
0.848 | 0.246 | search_minus_done; http://172.18.8.135:50400/match?q=GCCTTCTCCAAGATTCTGAA&k=0&no_gap=0&offset=0&limit=11
0.867 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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