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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:29:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Felis catus Senzu DNA, chromosome: A1, American Shorthair breed.
AP023152.1:36925843-36925861
ATTTTACTACCATCTAATCATCAGCCCCCT36925843TTCAGATTTTTCCGACTTCCCTAGTGATGTCCTTTACAAAAAAGGGATC
CBFA41627.b1 CBFA: Normalized cDNA library made from whole fry of 5-, 9-, and 14-day old channel catfish (Fry 5) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq, XP_695007.2, PREDICTED: simila
FD305849.1:130-148
GGCGCCCCACGCGTCGAACGAATCCTTGGC130TTCAGATTTTTCCGACTTCAGGGTGGTGGTCTGGGCTAGCGGTTTGCGG
SIC_Ba0103B15.F SIC_Ba Setaria italica genomic 5', genomic survey sequence.
GS049760.1:747-765
TCATAATTTTTGGAGGTCGTTTGATCGAGT747TTCAGATTTTTCCGACTTCTTCACGTAGGCTGTTTTTGGAGCTGTGGAA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:39081817-39081835
AAAAAACGCTGGAAAATGAAAGTTTCGCGA39081817TTCAGATTTTTCCGACTTCGTTCTCCGTGAATTCTAAGATAGGTTTTGG
Chionographis japonica genome assembly, chromosome: 8.
OX393556.1:54328119-54328137
TTTTTTTTTCTGGACTCTTTCCCAACTTTT54328119TTCAGATTTTTCCGACTTCTCCTCTAGCCGATTTTTTTCCTACTTCCGA
Chionographis japonica genome assembly, chromosome: 11.
OX393559.1:8269135-8269153
GGTTTTCCTCGACACTTTTCCAAAAAAAAA8269135TTCAGATTTTTCCGACTTCTTCCCTACCCAATTTTTTCCCGACTTCCGG
Caenorhabditis nigoni strain JU1421 chromosome II.
CP115865.1:1017679-1017697
TAGTCGAAAAATTCAAGTTTTAGTCATTTT1017679TTCAGATTTTTCCGACTTCTAGCTCATTTTAAATCGAATTTCCAGCTAC
Notodromas monacha.
OA882093.1:157027-157045
ACGCACGCGAGGGTCAGAAAATACAGCGCT157027TTCAGATTTTTCCGACTTCTCAGTAGGAGGAATGCATCACCGTTAACAA
Criorhina berberina genome assembly, chromosome: 1.
OU862870.1:38472028-38472046
AGCAAGATCTTTGGATAAACCAGAGTCCAC38472028TTCAGATTTTTCCGACTTCTGTCCTAGCACATTGGTTAGCGGGATCGAA
Criorhina berberina genome assembly, chromosome: 1.
OU862870.1:38567017-38567035
AGCAAGATCTTTGGATAAACCAGAGTCCAC38567017TTCAGATTTTTCCGACTTCTGTCCTAGCACATTGGTTAGCGGGATCGAA
Cantharis rufa genome assembly, chromosome: 5.
OX376307.1:30221227-30221245
ATTAAATTACTTTGGACTACCCCTGATTTC30221227TTCAGATTTTTCCGACTTCCTCAGATTTCCTCGGACTACCTAAGACTTT
Fissipunctia ypsillon genome assembly, chromosome: 4.
OX387647.1:12191602-12191620
AAAGGGATAGGCGCTGTAGGTAAAGAATTT12191602TTCAGATTTTTCCGACTTCAACGTTATCCAGTGGCGAAGGGTTTTTATA
Beris chalybata genome assembly, chromosome: 4.
OX421897.1:480146-480164
CACTATTTTATGTATAAGCCACTAGTAGTC480146TTCAGATTTTTCCGACTTCCCTAAATGAAAAGGACTTGAATAATTCACG
Anania crocealis genome assembly, chromosome: 7.
OX438856.1:8197-8215
AACCCTATTTTAGACATAAGTATTGTAAAT8197TTCAGATTTTTCCGACTTCCGGTTGTAAAGATATTGAATTAATTGTGAT
Anania crocealis genome assembly, chromosome: 14.
OX438863.1:144469-144487
AACCCTATTTTAGACATAAGTATTCAAAAT144469TTCAGATTTTTCCGACTTCCGGTTCCAAAGTTATAAAATTAATAGCGAT
Anania crocealis genome assembly, chromosome: 15.
OX438864.1:21103760-21103778
AACCCTACTTTAGACATAAGTATTCAAAAT21103760TTCAGATTTTTCCGACTTCCGGTTCCAAAGTTATTAAATTAATAGCGAT
Anania crocealis genome assembly, chromosome: 5.
OX438884.1:21718-21736
AACCCTATTTTAGACATAAGTATTCTAAAT21718TTCAGATTTTTCCGACTTCCGGTTCCAAAGTTATTAAATTAATAGTGAT
Luffia ferchaultella genome assembly, chromosome: 15.
OX453255.1:901070-901088
TGTAGATAAAACTACATAAATCAGAATTAA901070TTCAGATTTTTCCGACTTCAATCTTTGGAAACAGAGTAGGGGTGAAACG
Calliopum simillimum genome assembly, chromosome: 4.
OX638371.1:9270406-9270424
AATTTTTATGGGTTTTTTACTTCCGACTTG9270406TTCAGATTTTTCCGACTTCTTCCACAGTTTTTCGATTTTTTAAGTTTGT
Pilophorus perplexus genome assembly, chromosome: 2.
OY037009.1:15799091-15799109
GCTCGCCAAACTGGATTTTTTAAGACCAAT15799091TTCAGATTTTTCCGACTTCTAGAAGTGCCAAATAATAAAAACGATTCTC
Pilophorus perplexus genome assembly, chromosome: 6.
OY037013.1:4874677-4874695
GCTCGCCAAAATGGATTTTTTAAGATCAAT4874677TTCAGATTTTTCCGACTTCTAGAAGTGCCAAATAATAAAGATGAGCATT
Pilophorus perplexus genome assembly, chromosome: 7.
OY037014.1:20792789-20792807
GCTCGTCGAACTGAATTGTTGAAGACTAAT20792789TTCAGATTTTTCCGACTTCTGGAAGTGCCCTAGAATAAAGAAGACCAAA
Pilophorus perplexus genome assembly, chromosome: 7.
OY037014.1:24328584-24328602
GTTCGCCATACACGACTTTATAAGACCAAT24328584TTCAGATTTTTCCGACTTCTGAAAGTGCCCTTTAGAATAAATTTTATAG
Pilophorus perplexus genome assembly, chromosome: 10.
OY037017.1:18880876-18880894
ACTCGCCAAACTGGATTTTATAAGACCGAT18880876TTCAGATTTTTCCGACTTCCAGAATTCTGGAAGTACCTTATAATTTATA
Balanococcus diminutus genome assembly, chromosome: 2.
OY390715.1:42277533-42277551
AGGTACCCAAGGGTAATGTTGAAATTTTTT42277533TTCAGATTTTTCCGACTTCTAAAATTTCATATTCAAATTGCTTTGGTAG
Neocrepidodera transversa genome assembly, chromosome: 1.
OY725336.1:7224502-7224520
AGCATACCTTGAATAGCTTCCAAACAGATT7224502TTCAGATTTTTCCGACTTCCGGTTTCAAAACTGATTTTACAAACCGGAA
Sepiola atlantica genome assembly, chromosome: 31.
OY744545.1:54319367-54319385
ATGTTTGTCTTCTGTGTCTTCACCCTTTCT54319367TTCAGATTTTTCCGACTTCGGTAAGCGACGACTGAACCGCTCTCTTGCT
Toxonevra muliebris genome assembly, chromosome: 1.
OY829326.1:7133813-7133831
AACTAATTTCGTTGATGAAGATAGCAAAGT7133813TTCAGATTTTTCCGACTTCACGTTTTTCCGAGAAATGGTGTTGCTTTAA
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:193377917-193377935
AAGTGGCACAGCAGTTAGAGCACTGGACCT193377917GAAGTCGGAAAAATCTGAATTCAAATCCACTTTCAAGCATTTACTAGCT
CBFA41627.g1 CBFA: Normalized cDNA library made from whole fry of 5-, 9-, and 14-day old channel catfish (Fry 5) Ictalurus punctatus cDNA 3' similar to zebrafish RefSeq, XP_695007.2, PREDICTED: simila
FD305850.1:670-688
CCGCAAACCGCTAGCCCAGACCACCACCCT670GAAGTCGGAAAAATCTGAAGC
TSA: Ictalurus punctatus Contig15105.Icpu mRNA sequence.
HP594084.1:670-688
CCGCAAACCGCTAGCCCAGACCACCACCCT670GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Ictalurus punctatus aby_k77:646382 mRNA sequence.
JT316315.1:837-855
CCGCAAACCGCTAGCCCAGACCACCACCCT837GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Ictalurus punctatus aby_k77:646381 mRNA sequence.
JT418122.1:837-855
CCGCAAACCGCTAGCCCAGACCACCACCCT837GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Ictalurus punctatus aby_k33:2108188 mRNA sequence.
JT438758.1:2282-2300
CCGCAAACCGCTAGCCCAGACCACCACCCT2282GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Ictalurus punctatus aby_k41:1586505 mRNA sequence.
JT451512.1:1373-1391
CCGCAAACCGCTAGCCCAGACCACCACCCT1373GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Ictalurus punctatus aby_k55:1017152 mRNA sequence.
JT472595.1:768-786
CCGCAAACCGCTAGCCCAGACCACCACCCT768GAAGTCGGAAAAATCTGAAGCCAAGGATTCGTTCGACGCGTGGGGCGCC
TSA: Nitella mirabilis comp5804_c0_seq1 mRNA sequence.
JV745273.1:302-320
CATATAATATGCAGAACAGCACGGATGGGT302GAAGTCGGAAAAATCTGAAAGGACTCAGCAGGATGGACCAGAAAAGAAA
HDE169I13.R HDE Setaria viridis genomic 3', genomic survey sequence.
KS273576.1:501-519
TTCCACAGCTCCAAAAACAGCCTACGTGAA501GAAGTCGGAAAAATCTGAAACTCGATCAAACGACCTCCAAAAAATTATG
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:27181393-27181411
CCAAAACCTATCTTGGAATTCACGGAGAAT27181393GAAGTCGGAAAAATCTGAATCGCGAAACTTTCATTTTCCCGCGTTTTTT
Setaria viridis cultivar ME034v chromosome 6.
CP050800.1:20372220-20372238
TTCCACAGCTCCAAAAACAGCCTACGTGAA20372220GAAGTCGGAAAAATCTGAAACTCGATCAAACGACCTCCAAAAAATTATG
Chionographis japonica genome assembly, chromosome: 1.
OX393549.1:57103823-57103841
TCAGAAGTCGGGAAAAAATCGGCGAGAGGA57103823GAAGTCGGAAAAATCTGAACAAAGTCGAGAAAAAAACAGGAGAATTTTA
Smittia sp. YW1114-2 chromosome 3.
CP093834.1:214760-214778
TAGGTGCGTGAAATGCTGCTCTGGAAAGGT214760GAAGTCGGAAAAATCTGAAGAGTCGCCAGTTAAACAAACAATACTTGTG
Cheilosia vulpina genome assembly, chromosome: 5.
OU744280.1:55189363-55189381
CAGAATCTCATTGTACAGCAGCAGATCGAC55189363GAAGTCGGAAAAATCTGAATAAAACACGTCTGAAATTAGGGATACAGTT
Lasioglossum morio genome assembly, chromosome: 6.
OU744328.1:8828218-8828236
CGAACAAGAGCGATTCAGGGTGTAGTGTTC8828218GAAGTCGGAAAAATCTGAAGTTCAGAACATATAATTAAGTCAACATAGA
Polietes domitor genome assembly, chromosome: 3.
OX377620.1:167412747-167412765
TAATTTTGAGAAATGGCTAAACGCTGACCT167412747GAAGTCGGAAAAATCTGAATTGACTTTTCGCTTTTTCAGTTTCTTAGCT
Drymonia ruficornis genome assembly, chromosome: 13.
OX401917.1:3613703-3613721
CCTGTAAGATTGACGCAAGTAATACACGAT3613703GAAGTCGGAAAAATCTGAAACCTTTTCAGATTGTGGCGTGTCGTTACAA
Anania crocealis genome assembly, chromosome: 15.
OX438864.1:20869095-20869113
ATCACTATTAATTTAATAACTTTGGAACCG20869095GAAGTCGGAAAAATCTGAAATTTTGAATACTTATGTCTTAAATAGGGTT
Anania crocealis genome assembly, chromosome: 15.
OX438864.1:20885744-20885762
ATCACTATTAATTTAATAACTTTGGAACCG20885744GAAGTCGGAAAAATCTGAAATTTTGAATACTTATGTCTAAAATAGGGTT
Anania crocealis genome assembly, chromosome: 20.
OX438869.1:17921155-17921173
ATCACAATTAATTCAATATCTTTACAACCG17921155GAAGTCGGAAAAATCTGAAATTTACAATACTTATGTCTAAAATAGGGTT
Anania crocealis genome assembly, chromosome: 21.
OX438870.1:17589997-17590015
ATCACTATTAATTTAATAACTTTGGAACCG17589997GAAGTCGGAAAAATCTGAAATTTTGAATACTTATGTCTAAAATAGGGTT
Anania crocealis genome assembly, chromosome: 28.
OX438877.1:9385372-9385390
ATCACTATTAATTTAATAACTTTGGAACCG9385372GAAGTCGGAAAAATCTGAAATTTTGAATACTTATGTCTTAAATAGGGTT
Pilophorus perplexus genome assembly, chromosome: 1.
OY037008.1:10726281-10726299
AGGAGTCATTTTTATTCTAGGCTATTTCTA10726281GAAGTCGGAAAAATCTGAAATAATTTCAAATGTTCAAGACCTGGTTGGT
Pilophorus perplexus genome assembly, chromosome: 2.
OY037009.1:31315950-31315968
TTTGGTCATCTTTATTCTAGGGCACTTCAA31315950GAAGTCGGAAAAATCTGAAATTGGTCTTAAAAAATCCAGTTTGGTGAGC
Pilophorus perplexus genome assembly, chromosome: 4.
OY037011.1:11303503-11303521
CGAGGTCGTCTTTATTCTAAGCAACTTCCA11303503GAAGTCGGAAAAATCTGAAATAATTATTGGACTTAAAAAATTCGCCAGC
Pilophorus perplexus genome assembly, chromosome: 7.
OY037014.1:26737201-26737219
ATAGGTCATCTTTATTCTAGGGAACTTCCA26737201GAAGTCGGAAAAATCTGAAATTGGTCTTAAAAAATCCAGTTTGGCGAGC
Hydrotaea cyrtoneurina genome assembly, chromosome: 1.
OY282512.1:79844151-79844169
CTTCGGCGAAGGCTCAACCTCCGTTTCGGA79844151GAAGTCGGAAAAATCTGAATTAGTAGCACCAGATTCTGAACCATTATCG
Caenorhabditis wallacei genome assembly, chromosome: I.
OZ009935.1:10957636-10957654
CATGTTATCCGGAATTCCGCTGATCTATCG10957636GAAGTCGGAAAAATCTGAATTTCAAGCCAAAATTCTGCTCTCGACTGTT
Oxycera nigricornis genome assembly, chromosome: 3.
OZ012661.1:40914984-40915002
CTTCCGGGAAGTGATTTGTAGAATTGTTTT40914984GAAGTCGGAAAAATCTGAAAATATAAAAGGTTTTTTTTGTAAAAAAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCAGATTTTTCCGACTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAGATTTTTCCGACTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.311 | 0.302 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAGATTTTTCCGACTTC&k=0&no_gap=0&offset=0&limit=50
0.663 | 0.352 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGTCGGAAAAATCTGAA&k=0&no_gap=0&offset=0&limit=22
0.683 | 0.020 | cgi_end;

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