GGGenome | Results

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2025-04-06 01:47:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BONGD73TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONGD73, genomic survey sequence.
BZ495717.1:305-324

AACCCAATACTTTAATTTCAAACTACTCCA305TTCAGCTATACCATGCCGGTGGTTTATTCTCTCCGGCCGGTTTATTTTTT

Brassica oleracea clone BAC Bo37N21, partial sequence.
AY350710.1:42618-42637

AACCCAATACTTTAATTTCAAACTAGTCCA42618TTCAGCTATACCATGCCGGTGGTTTATTCTCTCCGGCCGGTTTATTTTTT

Nannizziopsis arthrosporioides strain CBS 118890 chromosome II.
CP098261.1:6314807-6314826

GTTCGAGCTGGAGTTTCCTAACCCAGAACC6314807TTCAGCTATACCATGCCGGTCTCGATGCGTTTCTTTGTTCTACTACTTTT

Brassica napus genome assembly, chromosome: C09.
HG994373.1:62593627-62593646

AACCCAATACTTTAATTTCAAACTACTCCA62593627TTCAGCTATACCATGCCGGTGGTTTATTCTCTCCGGCCGGTTTATTTTTT

Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60530911-60530930

AACCCAATACTTTAATTTCAAACTACTCCA60530911TTCAGCTATACCATGCCGGTGGTTTATTCTCTCCGGCCGGTTTATTTTTT

Brassica oleracea transcription factor-like protein (T2I1_290) gene, partial cds; putative oleosin (GRP1), putative oleosin (GRP2), putative oleosin (GRP3), putative oleosin (GRP4), and putative oleos
AY028608.1:6955-6974

AAAAAATAAACCGGCCGGAGAGAATAAACC6955ACCGGCATGGTATAGCTGAATGGACTAGTTTGAAATTAAAGTATTGGGTT

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2886086-2886105

AAAAAATAAACCGGCCGGAGAGAATAAACC2886086ACCGGCATGGTATAGCTGAATGGAGTAGTTTGAAATTAAAGTATTGGGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAGCTATACCATGCCGGT&k=0&no_gap=0&offset=0&limit=50
0.162 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGGCATGGTATAGCTGAA&k=0&no_gap=0&offset=0&limit=45
0.163 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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