GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:49:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3916 from patent US 10858665.
MX132268.1:1086-1109
CATAGTTTGCTATGCTCTTACTTCATTCAT1086TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
Sequence 3916 from patent US 11485982.
OO834653.1:1086-1109
CATAGTTTGCTATGCTCTTACTTCATTCAT1086TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
Sequence 3916 from patent US 11512323.
OO918355.1:1086-1109
CATAGTTTGCTATGCTCTTACTTCATTCAT1086TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
TSA: Elaeis guineensis isotig05957.Elguifruit mRNA sequence.
JO093209.1:1047-1070
CATAGTTTGCTATGCTCTTACTTCATTCAT1047TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
TSA: Elaeis guineensis isotig05958.Elguifruit mRNA sequence.
JO093210.1:1613-1636
CATAGTTTGCTATGCTCTTACTTCATTCAT1613TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
Elaeis guineensis putative transmembrane 9 superfamily member 3 protein (TM9SF3) mRNA, complete cds.
KC146067.1:1062-1085
CATAGTTTGCTATGCTCTTACTTCATTCAT1062TTCAGGCTATGTGAGTGGAGGACTCTACTCCCGGAGTGGAGGTAAAAACTGGAT
Elaeis guineensis EST, clone (6lib)_isotig19228.
LM615970.1:1110-1133
ATCCAGTTTTTACCTCCACTCCGGGAGTAG1110AGTCCTCCACTCACATAGCCTGAAATGAATGAAGTAAGAGCATAGCAAACTATG
TSA: Rhynchophorus ferrugineus contig02039.Rhfeelpa mRNA sequence.
JR469502.1:240-263
ATCCAGTTTTTACCTCCACTCCGAGAGTAA240AGTCCTCCACTCACATAGCCTGAAATGAATGAAGTAAGAGCATAGCAAACTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCAGGCTATGTGAGTGGAGGACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAGGCTATGTGAGTGGAGGACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.306 | 0.298 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAGGCTATGTGAGTGGAGGACT&k=0&no_gap=0&offset=0&limit=50
0.440 | 0.134 | search_minus_done; http://172.18.8.135:50400/match?q=AGTCCTCCACTCACATAGCCTGAA&k=0&no_gap=0&offset=0&limit=44
0.442 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).