GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:01:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bos taurus genome assembly, chromosome: 18.
LR962748.1:56700097-56700116
TAAAGTAAAAGTGCCAATTCTTTAACATGA56700097TTCATCAGGGATCTCCAAGGCCATCCTCAAGGTTAATGAATCATAGAAGG
Bos gaurus x Bos taurus genome assembly, chromosome: 18.
OX258972.1:58639767-58639786
TAAAGTAAAAGTGCCAATTCTTTAACATGA58639767TTCATCAGGGATCTCCAAGGCCATCCTCAAGGTTAATGAATCATAGAAGG
Bos taurus strain mammals genome assembly, chromosome: 18.
OX344707.1:60166703-60166722
AGGAATTCTTTGTTATATTCTTTAACATGA60166703TTCATCAGGGATCTCCAAGGCCATCCTCAAGGTTAATGAATCATAGAAGG
Bos taurus genome assembly, chromosome: Bta18.
OY997246.1:61373150-61373169
AGGAATTCTTTGTTATATTCTTTAACATGA61373150TTCATCAGGGATCTCCAAGGCCATCCTCAAGGTTAATGAATCATAGAAGG
Bos taurus clone CH240-125H15, WORKING DRAFT SEQUENCE, 7 unordered pieces.
AC163594.3:107130-107149
AGGAATTCTTTGTTATATTCTTTAACATGA107130TTCATCAGGGATCTCCAAGGCCATCCTCAAGGTTAATGAATCATAGAAGG
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:411568021-411568040
GATTGGAGGGATCTCGATGACAGAGTTGCT411568021TTCATCAGGGATCTCCAAGGAGTTTTCCAGAATCTCATCTCCTTCAATGG
Bos taurus genome assembly, chromosome: 18.
LR962873.1:7866262-7866281
CCTTCTATGATTCATTAACCTTGAGGATGG7866262CCTTGGAGATCCCTGATGAATCATGTTAAAGATTTGGCACTTTTACTTTA
Podarcis lilfordi genome assembly, chromosome: 8.
OX395133.1:8027673-8027692
AAGACTGTTGACTATTCCATTTCAGCTTTA8027673CCTTGGAGATCCCTGATGAATAAATTGTGTGGGTTTGCATAGGAAACATT
jnr70e10.g1 B.oleracea001 Brassica oleracea genomic, genomic survey sequence.
BZ052171.1:298-317
GTTTGCCGTTTGCTGAAGGCGAGAGCCAAG298CCTTGGAGATCCCTGATGAACCGATCCAATTCTATGTCCAGATCTCTCCT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7959030-7959049
GTTTGCCGTTTGCTGAAGGCGAGAGCCAAG7959030CCTTGGAGATCCCTGATGAACCGATCCAATTCTATGTCCAGATCTCTCCT
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:412323186-412323205
CCATTGAAGGAGATGAGATTCTGGAAAACT412323186CCTTGGAGATCCCTGATGAAAGCAACTCTGTCATCGACATCCCTCCAATC
Trichobilharzia szidati genome assembly, chromosome: Z.
OX235279.1:16017195-16017214
CACGAGGTATTTTAGATAGCTGTTTTGTTT16017195CCTTGGAGATCCCTGATGAATAGGAAAAAAAATACTGTGCAGTAAATTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCATCAGGGATCTCCAAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCATCAGGGATCTCCAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=TTCATCAGGGATCTCCAAGG&k=0&no_gap=0&offset=0&limit=50
0.295 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGGAGATCCCTGATGAA&k=0&no_gap=0&offset=0&limit=44
0.298 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).