GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:24:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scyliorhinus canicula genome assembly, chromosome: 27.
LR744056.1:20971555-20971573
TGCTTTCAGTCCATCTCCGGCAATGGGTTC20971555TTCATCCAGAACCACAGTAATTGACCACATGATATTTCCGCACAGTTTG
Labrus mixtus genome assembly, chromosome: 12.
OY757295.1:1257149-1257167
TGACATCCTGCAGCCAATAAGGATCAAGTA1257149TTCATCCAGAACCACAGTACAACTTGAAATATGGAACAAGGATGATTTT
Sequence 20 from Patent WO2014080034.
JC528730.1:1-19
1TTCATCCAGAACCACAGTA
TSA: Sclerotinia homoeocarpa SHT_5082 mRNA sequence.
JU095121.1:697-715
AATATCTAGCATGACTTGATATTTCACATT697TTCATCCAGAACCACAGTATTCATAGGCCTGCAAGGTCGTCTAGCAACT
Salarias fasciatus genome assembly, chromosome: 18.
LR597453.1:7689326-7689344
CACTGACCTGTTGGGGGTCCGCTCCTTTTT7689326TACTGTGGTTCTGGATGAAGTCCACCAGGCCGTGCACCACGGTCTTCAC
Chanos chanos genome assembly, chromosome: 5.
LR697110.1:24186465-24186483
GAGGCGGCTGCTGCTGGTCCGTTCCCTTCT24186465TACTGTGGTTCTGGATGAAGTCCACAAGGCCGTGAACCACAGTCTTCAC
Scyliorhinus canicula genome assembly, chromosome: 16.
LR744045.1:55427796-55427814
GGGTGATGTGGGCGAGTAAACTGACTAGAG55427796TACTGTGGTTCTGGATGAAAAGGAATATAGAAAAGGCAGGAGCACTGTA
Osmerus eperlanus genome assembly, chromosome: 16.
OY830029.1:15627223-15627241
GTCCTACCTGCTGCGGGTCTGCTCCCTTCT15627223TACTGTGGTTCTGGATGAAGTCCACCAGACCATGAACCACCGTCTTCAC
TSA: Sclerotinia homoeocarpa 21620.Schocontig mRNA sequence.
JW834886.1:1131-1149
AGTTGCTAGACGACCTTGCAGGCCTATGAA1131TACTGTGGTTCTGGATGAAAATGTGAAATATCAAGTCATGCTAGATATT
Phoenix dactylifera microsatellite DNA, clone CIR085.
AJ571686.1:342-360
AAGGGATGACGGCTGCCAAACTCCAAAGTT342TACTGTGGTTCTGGATGAAAGATACGAACTGTGT
Marinobacter sp. LA51 DNA, complete genome.
AP028070.1:1504340-1504358
CAAGGGAACCCTGAACCTGGACCGGGTAAA1504340TACTGTGGTTCTGGATGAAGCAGACCGAATGCTGGACATGGGCTTCGAA
Maratus michaelseni genome assembly, chromosome: X1.
OZ007586.1:497490792-497490810
GTTCTTGTTTAAAGATTGCGCACGTCTCGT497490792TACTGTGGTTCTGGATGAAGTGCATCACGGCCGGTCATATATTCGTACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCATCCAGAACCACAGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCATCCAGAACCACAGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.399 | 0.390 | search_plus_done; http://172.18.8.135:50400/match?q=TTCATCCAGAACCACAGTA&k=0&no_gap=0&offset=0&limit=50
0.521 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=TACTGTGGTTCTGGATGAA&k=0&no_gap=0&offset=0&limit=46
0.526 | 0.005 | cgi_end;

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