GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:41:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bruchidius siliquastri genome assembly, chromosome: 5.
OX438533.1:2973505-2973523
AGTAGTATATGGATATATTTTATAGGATTC2973505TTCATGAAGTCGATCTTTTGATATTGCCTCGCATCTCACTCAGTTTAAA
Spisula subtruncata genome assembly, chromosome: 9.
OY787668.1:29646307-29646325
TTTTATTACTTGTTCTAACTTACTCTCTGT29646307TTCATGAAGTCGATCTTTTAGCGTATTATTTTCATCAATTGCGCGGTAC
Maratus michaelseni genome assembly, chromosome: 1.
OZ007587.1:450488107-450488125
ATATATTTCACTATCTACCCTGATTGTCGT450488107TTCATGAAGTCGATCTTTTCTATAGCTTCCTTCATGTCATTTTCATCCC
Cataclysta lemnata genome assembly, chromosome: Z.
OZ008338.1:9712776-9712794
ATTTTGTAATTTAAAAAGTAAGCTTCCGGC9712776TTCATGAAGTCGATCTTTTCCAATACATCGTTTTCTTGTTGCGTTTGAA
Poecilia reticulata genome assembly, chromosome: 11.
LR880655.1:6216461-6216479
AGATCCTGCCTGATTAAAGGGAATTATAAC6216461AAAAGATCGACTTCATGAAATCTAGACATTCCAAAAAATTCAGCAACAA
Nannobrachium achirus genome assembly, chromosome: 19.
OY997656.1:28658439-28658457
GTATGTATATTACATTTCTGGGTTCCTCTT28658439AAAAGATCGACTTCATGAACACCGTGTGAAAGACCCCAAATATTAGGTA
uncultured Roseivirga sp. isolate AI_MB341 genome assembly, chromosome: AI_MB341_contig-1.
OX044362.1:777561-777579
GGGAGGGTATTTTAAAGAAACTTATCGGTC777561AAAAGATCGACTTCATGAAAGTAAGTTGCCGGATCGCTATCGCTCTTCC
AGENCOURT_26621678 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7302677 5', mRNA sequence.
CO387140.1:808-826
CTACTAGTAATACCTCATTGTCTGACCAAA808AAAAGATCGACTTCATGAAGCGAAGTCCATATGCTGAAGGAGCGAATCT
Vibrio gallaecicus CECT 7244 DNA, chromosome 1, complete sequence.
AP025490.1:659957-659975
TTTGAGAGCTGCAGCTTTGTGGGATGAAGT659957AAAAGATCGACTTCATGAAAATGCCTTTGGTCTATCTGGTGGTCAGCAG
Laspeyria flexula genome assembly, chromosome: 11.
LR989960.1:1282870-1282888
ATTTCATCCATAAGGCTATCAACGTATTTA1282870AAAAGATCGACTTCATGAACTTCATGTGAAAGTTTAAAATTATTTCATA
Eupithecia subumbrata genome assembly, chromosome: 7.
OX438647.1:3976083-3976101
AACAATCTACAGGTAGCTCAACTGACTCTC3976083AAAAGATCGACTTCATGAATATGTATATCATGAAAACTTTTATCAAATA
Sepia lycidas genome assembly, chromosome: 44.
OZ010614.1:55056717-55056735
ATATATATATCTGTAAAAAGCTAGGAATTG55056717AAAAGATCGACTTCATGAAAGAGCAAAGTAAAACAATAAGAAAAATATA
Pimpla rufipes genome assembly, chromosome: 11.
OZ010640.1:5190336-5190354
AATAAGAAAAGACATAATTAGTAATATGAC5190336AAAAGATCGACTTCATGAAAGACGATGTATTCAACAAGCAATTAAAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCATGAAGTCGATCTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCATGAAGTCGATCTTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.336 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=TTCATGAAGTCGATCTTTT&k=0&no_gap=0&offset=0&limit=50
0.500 | 0.164 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAGATCGACTTCATGAA&k=0&no_gap=0&offset=0&limit=46
0.506 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).