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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pleuronectes platessa genome assembly, chromosome: 24.
OX374671.1:9779701-9779720
TTGTTTTTTCACACTTTTTTGTTATTTCGC9779701TTCATGAGCTTTCTGATCCTGTGCGCTTGTAATTCCCGACAAGGTTTTTT
Platichthys flesus genome assembly, chromosome: 22.
OX438737.1:9850757-9850776
GTTGTTTTTTCCCACTTTTTGTTATTTCAC9850757TTCATGAGCTTTCTGATCCTGTGCGCTTGTAATTCCCAACAAGTTATTTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 4.
CP124716.1:81050411-81050430
ATCGCTAACTGAAGAGAAGTAGTCAACCCC81050411TTCATGAGCTTTCTGATCCTCTCAACCTCTGTGGACGTACTATCCATAGC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:29724793-29724812
ATCGCCAACTGAAGAGAAGTAGTCAACCCC29724793TTCATGAGCTTTCTGATCCTCTCATCCTCATTGGAGACACTATCCATAAC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:35597192-35597211
ATCACCAACTAAAGAGTAATAGTCAATCCC35597192TTCATGAGCTTTCTGATCCTTTCAGCCTCTATGGAGATACTAGCCGTATC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:33309136-33309155
CCCTTGAAGGTTGAGCACTTTGAAGATTGC33309136TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:34680898-34680917
CCCTTGAAGGTTGAGCACTTTGAAGATTGC34680898TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:32052970-32052989
CCCTTGAAGGTTGAGCACTTTGAAGATTGC32052970TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTAACAATTAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:32605850-32605869
CCCTTGAAGGTTGAGCACTTTGAAGATTGC32605850TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTAACAATTAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:36270507-36270526
CCCTTGAAGGTTGAGCACTTTGAAGATTGC36270507TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:34892361-34892380
CCCTTGAAGGTTGAGCACTTTGAAGATTGC34892361TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:33570386-33570405
CCCTTGAAGGTTGAGCACTTTGAAGATTGC33570386TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:31231428-31231447
CCCTTGAAGGTTGAGCACTTTGAAGATTGC31231428TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:36393436-36393455
CCCTTGAAGGTTGAGCACTTTGAAGATTGC36393436TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:33835540-33835559
CCCTTGAAGGTTGAGCACTTTGAAGATTGC33835540TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:35716266-35716285
CCCTTGAAGGTTGAGCACTTTGAAGATTGC35716266TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:34074262-34074281
CCCTTGAAGGTTGAGCACTTTGAAGATTGC34074262TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35587781-35587800
CCCTTGAAGGTTGAGCACTTTGAAGATTGC35587781TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:33923034-33923053
CCCTTGAAGGTTGAGCACCTTGAAGATTGC33923034TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:35727041-35727060
CCCTTGAAGGTTGAGCACTTTGAAGATTGC35727041TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:34960241-34960260
CCCTTGAAGGTTGAGCACTTTGAAGATTGC34960241TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:36863532-36863551
CCCTTGAAGGTTGAGCACTTTGAAGATTGC36863532TTCATGAGCTTTCTGATCCTATTTGACCAGAAGCGTGTGATAATTAGAGA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:33747082-33747101
CCCTTGAAGGTTGAGCACCTTGAAGATTGC33747082TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:32413124-32413143
CCCTTGAAGGTTGAGCACTTTGAAGATTGC32413124TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:32439370-32439389
CCCTTGAAGGTTGAGCACTTTGAAGATTGC32439370TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:23150743-23150762
CCCTTGAAGGTTGAGCACTTTGAAGATTGC23150743TTCATGAGCTTTCTGATCCTATTTGAGAAGAAGCATGTGACAATTAGAGA
Lathyrus aphaca genome assembly, chromosome: 1.
OZ014519.1:210495686-210495705
CATCATGGCTACCTGAGTTGAAGCTTTGTG210495686TTCATGAGCTTTCTGATCCTTTCTTTGGTGCAAATCCACCCCCTTTGACC
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 2.
HG994581.1:14047703-14047722
CTGGGGTCGATTTTAAGGAGTTTCTCCTCT14047703TTCATGAGCTTTCTGATCCTGTAGACGGTGTGCCTCTCGATCCCAACAAT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 9.
HG994588.1:23677947-23677966
CAGTGCTCTATTTTAAGGCTTTTCCACTCT23677947TTCATGAGCTTTCTGATCCTGTAGACGGTGAGGCTCTCGATCCTAACAAT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 13.
HG994592.1:20873744-20873763
TGGACTTGATTTTAAGGGGTTTTTCCCTCT20873744TTCATGAGCTTTCTGATCCTGTCGACGGTATCTCTCTCGATCCCAACAAT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 2.
LR794185.1:14047703-14047722
CTGGGGTCGATTTTAAGGAGTTTCTCCTCT14047703TTCATGAGCTTTCTGATCCTGTAGACGGTGTGCCTCTCGATCCCAACAAT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 9.
LR794192.1:23677947-23677966
CAGTGCTCTATTTTAAGGCTTTTCCACTCT23677947TTCATGAGCTTTCTGATCCTGTAGACGGTGAGGCTCTCGATCCTAACAAT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 13.
LR794196.1:20873744-20873763
TGGACTTGATTTTAAGGGGTTTTTCCCTCT20873744TTCATGAGCTTTCTGATCCTGTCGACGGTATCTCTCTCGATCCCAACAAT
Arvicola amphibius genome assembly, chromosome: 3.
LR862382.1:108447412-108447431
AGAAAGACTCAGAAACTAAGGAAACTCATG108447412AGGATCAGAAAGCTCATGAAATTTACAGGACTCAGGAAACTCAAAAATTT
Peromyscus eremicus genome assembly, chromosome: 7.
OX460400.1:34715374-34715393
AGAAAGACTCAGAAACTAAGGAAACTCATG34715374AGGATCAGAAAGCTCATGAAATTTACAGGACTCAGGAAACTCAGAAATTT
Chroicocephalus ridibundus genome assembly, chromosome: 6.
OZ001739.1:14720123-14720142
AACCATGGAGTATGTTCTATTTAATGGTGT14720123AGGATCAGAAAGCTCATGAAGTTCTGCAGTTCACCGAAGTGCACTCTAGG
Larus fuscus genome assembly, chromosome: 6.
OZ010759.1:14728831-14728850
AACCATGGAGTATGTTCTATTTAATGGTGT14728831AGGATCAGAAAGCTCATGAAGTTCTGCAGTTCACCGAAGTGCACTCTAGG
MAG: Porcine picobirnavirus isolate 15215_NODE_285_len_2432_cov_85.238536 hypothetical protein and capsid protein-like gene, partial sequence.
MW978380.1:481-500
TCTGGTTGCTACCATAATGTCAGCAGGATT481AGGATCAGAAAGCTCATGAAAATTAAGAACTTTATTAATAGCCGGAATGT
BH_PBa031J18.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS395674.1:893-912
GAAGTAACACTTGTTTTCGTCTCTTGAAAC893AGGATCAGAAAGCTCATGAAGTAATCTCAAAAGTCCTGAACCTTTCTGGT
Linum usitatissimum chromosome Lu12.
CP027622.1:1447683-1447702
TCAGCTTACCATTTTTTTGGCTTGTTTTTC1447683AGGATCAGAAAGCTCATGAAGCTATTTTGAGCGTTCTAAACCTTCATAGG
Cicer arietinum chromosome Ca7.
CP039337.1:17698704-17698723
CTTACAAAAATTATCTTCTTCTGGTCTAAT17698704AGGATCAGAAAGCTCATGAAGCAATATTTGAAGTGCTCAACCTTAAAGGG
Cicer arietinum chromosome Ca7.
CP040772.1:17698720-17698739
CTTACAAAAATTATCTTCTTCTGGTCTAAT17698720AGGATCAGAAAGCTCATGAAGCAATATTTGAAGTGCTCAACCTTAAAGGG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:10141477-10141496
TCTCTAATTATCACACGCTTCTGGTCAAAT10141477AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:10553765-10553784
TCTCTAATTATCACACGCTTCTGGTCAAAT10553765AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:10099435-10099454
TCTCTAATTATCACACGCTTCTGGTCAAAT10099435AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:10864891-10864910
TCTCTAATTATCACACGCTTCTGGTCAAAT10864891AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:10368664-10368683
TCTCTAATTATCACACGCTTCTGGTCAAAT10368664AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:11301601-11301620
TCTCTAAGTATCACACGCTTCTGGTCAAAT11301601AGGATCAGAAAGCTCATGAAGCAATCTTCAAGGTGCTCAACCTTCAAGGG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8252608-8252627
TCTCTAATTATCACACGCTTCTGGTCAAAT8252608AGGATCAGAAAGCTCATGAAGCAATCTTCAAAGTGCTCAACCTTCAAGGG
Persicaria maculosa genome assembly, chromosome: 2.
OY998252.1:17014247-17014266
ACATGCTTAACCTGTTTCCTTTGCTTGATC17014247AGGATCAGAAAGCTCATGAAGCCATCTTGAAAGTTTTGAACCTTTCTAGG
Persicaria maculosa genome assembly, chromosome: 16.
OY998266.1:17876341-17876360
ACATGCTTAACCTCTTTCCCTTGCTTGATC17876341AGGATCAGAAAGCTCATGAAGCCATCTTGAAAGTTTTGAACCTTTCTAGG
Lathyrus aphaca genome assembly, chromosome: 5.
OZ014523.1:238154107-238154126
GGGCCATTAGAGTTGGTTTGCACCAAAGAA238154107AGGATCAGAAAGCTCATGAATACAAAGCTCCAGCTCAGGTAACCTCCAGA
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 13.
HG994592.1:8917067-8917086
ATTGGTGGGATCGAGAGGCACGTCGTCTAG8917067AGGATCAGAAAGCTCATGAAAGAGAGGAAGAGGATTAAAATCGAGGCAAG
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 13.
LR794196.1:8917067-8917086
ATTGGTGGGATCGAGAGGCACGTCGTCTAG8917067AGGATCAGAAAGCTCATGAAAGAGAGGAAGAGGATTAAAATCGAGGCAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCATGAGCTTTCTGATCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCATGAGCTTTCTGATCCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.202 | 0.194 | search_plus_done; http://172.18.8.135:50400/match?q=TTCATGAGCTTTCTGATCCT&k=0&no_gap=0&offset=0&limit=50
0.404 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=AGGATCAGAAAGCTCATGAA&k=0&no_gap=0&offset=0&limit=17
0.417 | 0.014 | cgi_end;

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