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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 20:42:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia mRNA, clone: NFR1_02_42, 5' end sequence, expressed in fruit.
HX745826.1:20-39
CTCAAAACGTGCATTCGAT20TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFR1_08_91, 5' end sequence, expressed in fruit.
HX746324.1:17-36
AAAACGTGCATTCGAT17TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFR1_10_67, 5' end sequence, expressed in fruit.
HX746465.1:19-38
TCAAAACGTGCATTCGAT19TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFR1_19_01, 5' end sequence, expressed in fruit.
HX747169.1:11-30
TGCATTCGAT11TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFW1_06_84, 5' end sequence, expressed in flower bud.
HX761631.1:42-61
AAATTCCATCTCCCAAAACGTGCATTCGAT42TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFW2_01_91, 5' end sequence, expressed in flower bud.
HX762183.1:19-38
TCAAAACGTGCATTCGAT19TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
Pyrus pyrifolia mRNA, clone: NFW2_04_94, 5' end sequence, expressed in flower bud.
HX762396.1:18-37
CAAAACGTGCATTCGAT18TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus pyrifolia mRNA, contig: contig_2417.
FX395987.1:67-86
AAATTCCATCTCTCAAAACGTGCATTCGAT67TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc70.
FX608657.1:129-148
AAATTCCCTCTCTCAAAACCTTCATTCGAT129TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc312.
FX608899.1:22-41
TGGACAAGGCCTTCATTCGAT22TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc5833.
FX614420.1:18-37
GAGAGAGGTCATTCGAT18TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc11066.
FX619650.1:8-27
ATTCGAT8TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc19933.
FX628453.1:2-21
T2TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACAAC
TSA: Pyrus communis mRNA, contig: lc31523.
FX639624.1:12-31
CTTCATTCGAT12TTCCAAGTGTTTTTGCTCCAGTTTCCAACAAGAAGAAAATGGCTGACACC
Myrica gale genome assembly, chromosome: 3.
OZ005600.1:23458668-23458687
CTTGCGCTGCTGCAGATCGTATTTGGTCCA23458668TTCCAAGTGTTTTTGCTCCATTTTTGGCTTGGATTCACTGGGTACAGCGC
Cyprideis torosa.
OB669645.1:3717-3736
GGACCAGAACGATACTGGTGGTTTAGTTTT3717TTCCAAGTGTTTTTGCTCCAAGGTATTTTATTAATGCTGGTTTCACTGCC
Agrochola macilenta genome assembly, chromosome: 12.
OU753564.1:22923528-22923547
TGAAAAAAGGAAATGGCTCGATTAATTTGC22923528TTCCAAGTGTTTTTGCTCCAAGTTTAAATACCAGGAATAAACACAATCTT
Pleuronectes platessa genome assembly, chromosome: 20.
OX374667.1:10389181-10389200
AGTGACTTGAGGTTAAAATGCTGCAACCGA10389181TGGAGCAAAAACACTTGGAAGTCTCCTTTGGTGTTGCAGTAATTTCCCAG
Rutilus rutilus genome assembly, chromosome: 10.
OX637942.1:33316916-33316935
AAGAGACATGTGCAGTCTACCAAAAACTAT33316916TGGAGCAAAAACACTTGGAACGGCCATTTTAGACCCTGTAGTGACAAAGC
Fringilla coelebs genome assembly, chromosome: 10.
OY740734.1:23458036-23458055
CTCCTTCCAGAGAAAAACCTCCCAGAACTA23458036TGGAGCAAAAACACTTGGAATTTTAAAGCCCTCCAGGCAATGATTATAGC
TSA: Pyrus communis mRNA, contig: lc4711.
FX613298.1:7-26
GGAAAC7TGGAGCAAAAACACTTGGAAATCGGCATGACTAACAATAGCTCAGGCATT
TSA: Pyrus x bretschneideri Unigene4137_XinShao mRNA sequence.
JR599441.1:498-517
GTCAGCCATTTTCTTCTTCTTGTTGGAAAC498TGGAGCAAAAACACTTGGAAATCGAATGAAGGTTTTGAGAGATAGAATTT
TSA: Pyrus x bretschneideri Unigene41532_XinShao mRNA sequence.
JR633138.1:555-574
GTTGTCAGCCATTTTCTTCTTGTTGGAAAC555TGGAGCAAAAACACTTGGAAATCGAATGCACGTTTTGAGAGATGGAATTT
Papaver somniferum cultivar Roxanne chromosome 7.
CP048219.1:4848352-4848371
GAGAAAAGGAGGACGATCATAAGATCAACT4848352TGGAGCAAAAACACTTGGAAACAAGACTTTTCAGAATCTTTCCCGACCAC
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:4106410-4106429
GTTGTCAGCCATTTTCTTCTTGTTGGAAAC4106410TGGAGCAAAAACACTTGGAAATCGAATGAAGGTTTTGAGAGATGGAATTT
Isoperla grammatica genome assembly, chromosome: X1.
OX246745.1:3153462-3153481
TAAAATCTTAAATAATATATAGATTTTTGA3153462TGGAGCAAAAACACTTGGAATTCTGTGTTAATAATGTAGATCTCTAATCT
Neoitamus cyanurus genome assembly, chromosome: 2.
OX384541.1:11183122-11183141
ATGTTTGCATCATACCGATTGCCACTTGGA11183122TGGAGCAAAAACACTTGGAAATCCAGGCTGGGAGGGAAATTGGTCGCTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCAAGTGTTTTTGCTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCAAGTGTTTTTGCTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.053 | 1.044 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCAAGTGTTTTTGCTCCA&k=0&no_gap=0&offset=0&limit=50
1.189 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGCAAAAACACTTGGAA&k=0&no_gap=0&offset=0&limit=33
1.196 | 0.007 | cgi_end;

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