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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 20:54:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 13.
LR877200.1:49018748-49018767
CTGGGAACCAGAGCCTGCCCATAGTGCCTT49018748TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
Onychomys arenicola genome assembly, chromosome: 13.
OX460359.1:51705272-51705291
CTGGGAACCAGAGCCTGCCCACAGTGCCTT51705272TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
Onychomys leucogaster genome assembly, chromosome: 13.
OX460383.1:49399113-49399132
CTGGGAACCAGAGCCTGCCCACAGTGCCTT49399113TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
Onychomys leucogaster genome assembly, chromosome: 13.
OX460430.1:49305985-49306004
CTGGGAACCAGAGCCTGCCCACAGTGCCTT49305985TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
Onychomys arenicola genome assembly, chromosome: 13.
OX460454.1:53460229-53460248
CTGGGAACCAGAGCCTGCCCACAGTGCCTT53460229TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
Onychomys torridus genome assembly, chromosome: 13.
OX460894.1:49018748-49018767
CTGGGAACCAGAGCCTGCCCATAGTGCCTT49018748TTCCAGACAGCTTGGGAGAGGCCCCTGCAAGGTCCTGAGGTATTCTAAGC
UFL_012_64 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES835766.1:202-221
ACTTGCATAATAACAGATTACAAGGAATTG202TTCCAGACAGCTTGGGAGAGTTAAAAAATCTACATCTACTGAATCTGGAG
TSA: Cannabis sativa PK05015.2_1.CasaPuKu mRNA sequence.
JP456559.1:331-350
ATTTGCAACACAATAGATTACAAGGGACAG331TTCCAGACAGCTTGGGAGAGTTGGAGAACCTTCATTTATTGAATCTTGAA
TSA: Cannabis sativa PK05015.1_1.CasaPuKu mRNA sequence.
JP479163.1:1623-1642
ATTTGCAACACAATAGATTACAAGGGACAG1623TTCCAGACAGCTTGGGAGAGTTGGAGAACCTTCATTTATTGAATCTTGAA
Gossypium raimondii isolate D5-4 chromosome D5_07.
CP032559.1:28057404-28057423
ACTTGCATAATAACAGTTTACAAGGAATTG28057404TTCCAGACAGCTTGGGAGAGTTAAAGAATCTACATCTACTGTAAGTGATT
Gossypium herbaceum isolate Zhongcao1 chromosome 7.
CP106693.1:44976326-44976345
ACTTGCATAATAACAGATTACAAGGAATTG44976326TTCCAGACAGCTTGGGAGAGTTAAAAAATCTACATCTACTGTAAGTGACT
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:54538082-54538101
ACTTGCAAAATAACAGTTTACAAGGAATTG54538082TTCCAGACAGCTTGGGAGAGTTAAAGAATCTACATCTACTGTAAGTGACT
Theobroma grandiflorum isolate C1074 chromosome 1.
CP142130.1:26100190-26100209
ACTTGCATAATAACAGTTTACAGGGAATAG26100190TTCCAGACAGCTTGGGAGAGTTAGAGAATCTACATCTACTGTAAGTGACT
Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:21690351-21690370
ACTTGCATAATAACAGTTTACTGGGAATAG21690351TTCCAGACAGCTTGGGAGAGTTAGAGAATCTACATCTACTGTAAGTGACT
TSA: Pyrus x bretschneideri Unigene39539_XinShao mRNA sequence.
JR631479.1:170-189
TTCCAGGTTCAATAAGTGAAGTTCTTCTAA170CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Gossypioides kirkii chromosome KI_07.
CP032249.1:20811266-20811285
AGTCACTTACAGTAGATGTAGATTCTTTAA20811266CTCTCCCAAGCTGTCTGGAACAATTCCTTGTAAACTGTTATTATGCAAGT
Gossypium turneri isolate D10-2 chromosome D10_07.
CP032577.1:25215905-25215924
AATCACTTACAGTAGATGTAGATTCTTTAA25215905CTCTCCCAAGCTGTCTGGAACAATTCCTTGTAAACTGTTATTATGCAAGT
Gossypium herbaceum isolate GPA1alz chromosome 7.
CP106706.1:54574065-54574084
AGTCACTTACAGTAGATGTAGATTTTTTAA54574065CTCTCCCAAGCTGTCTGGAACAATTCCTTGTAATCTGTTATTATGCAAGT
Gossypium rotundifolium isolate GPK201 chromosome 7.
CP106728.1:88931696-88931715
AGTCACTTACAGTAGATGTAGATTCTTTAA88931696CTCTCCCAAGCTGTCTGGAACAATTCCTTGTAAACTATTATTTTGCAAGT
Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:18514964-18514983
AGTCACTTACAGTAGATGTAGATTCTCTAA18514964CTCTCCCAAGCTGTCTGGAACTATTCCCTGTAAACTGTTATTATGCAAGT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:27300151-27300170
GTTCACTTACAATAAGTGAAGTTCTTCTAA27300151CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:26293280-26293299
GTTCACTTACAATAAGTGAAGTTCTTCTAA26293280CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:26844393-26844412
GTTCACTTACAATAAGTGAAGTTCTTCTAA26844393CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:28084120-28084139
GTTCACTTACAATAAGTGAAGTTCTTCTAA28084120CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:25854492-25854511
GTTCACTTACAATAAGTGAAGTTCTTCTAA25854492CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Theobroma cacao genome assembly, chromosome: I.
LT594788.1:16857951-16857970
AGTCACTTACAGTAGATGTAGATTCTCTAA16857951CTCTCCCAAGCTGTCTGGAACTATTCCCTGTAAACTGTTATTATGCAAGT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:27993220-27993239
GTTCACTTACAATAAGTGAAGTTCTTCTAA27993220CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:27851133-27851152
GTTCACTTACAATAAGTGAAGTTCTTCTAA27851133CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:28678145-28678164
GTTCACTTACAATAAGTGAAGTTCTTCTAA28678145CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Potentilla anserina genome assembly, chromosome: 2.
OW176982.1:17544950-17544969
TTAGACTTACAACAAATGAAGATCTTCCAA17544950CTCTCCCAAGCTGTCTGGAACCATTCCCTGTAAAGAATTGTTTTGCAAGT
Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:17440096-17440115
AGTCACTTACAGTAGATGTAGATTCTCTAA17440096CTCTCCCAAGCTGTCTGGAACTATTCCCAGTAAACTGTTATTATGCAAGT
Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:17580537-17580556
AGTCACTTACAGTAGATGTAGATTCTCTAA17580537CTCTCCCAAGCTGTCTGGAACTATTCCCTGTAAACTGTTATTATGCAAGT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:26318470-26318489
GTTCACTTACAATAAGTGAAGTTCTTCTAA26318470CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26705064-26705083
GCTCACTTACAATAAGTGAAGTTCTTCTAA26705064CTCTCCCAAGCTGTCTGGAACAATTCCCTGCAAAGTATTATTTTGCAAGT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18705821-18705840
GTTCACTTACAATAAGTGAAGTTCTTCTAA18705821CTCTCCCAAGCTGTCTGGAACGATTCCCTGCAAAGTATTATTTTGCAAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCAGACAGCTTGGGAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCAGACAGCTTGGGAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.427 | 0.418 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCAGACAGCTTGGGAGAG&k=0&no_gap=0&offset=0&limit=50
0.559 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTCCCAAGCTGTCTGGAA&k=0&no_gap=0&offset=0&limit=36
0.573 | 0.014 | cgi_end;

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