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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-24 17:57:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Sesamum indicum cultivar Zhongzhi 11 Unigene20873 mRNA sequence.
JL342956.1:143-162
ATCTTCTGGGTCTAACTCCACATTTCCACC143TTCCCAAAGATCATTTTCGCTGACCATGTCCCAGGAACTGCCTTCCTCAG
TSA: Sesamum indicum Locus_5451_Transcript_5/5_Confidence_0.545_Length_1400 mRNA sequence.
JP637013.1:887-906
ATCTTCTGGGTCTAACTCCACATTTCCACC887TTCCCAAAGATCATTTTCGCTGACCATGTCCCAGGAACTGCCTTCCTCAG
Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
AP015036.1:27991731-27991750
TTGGTCTGAGTTAGAGTTAGCATCTTCACC27991731TTCCCAAAGATCATTTTCGCTAACAAGATCCCAAGAACTACCTTCTTCTG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-02.
CP023114.1:26537573-26537592
ATCTTCTTGGTCTGAGTCAACATCTTCACT26537573TTCCCAAAGATCATTTTCGCTGATCAAATCCCAAGAATTACCTTCTTCTG
Medicago lupulina genome assembly, chromosome: 7.
OY283145.1:48363406-48363425
ATAATCTTCTTCGTCAGAAGTGTCAACACC48363406TTCCCAAAGATCATTTTCGCTGATCAAATCCCAAGAATTACCGTCTTCTG
Alsophila aescularia genome assembly, chromosome: 13.
OX276386.1:24032241-24032260
GCTGTCCCTCTATACAACGCTCGATAATTT24032241TTCCCAAAGATCATTTTCGCCTGTTGCAGTCGAGACATACGGACCGAAAC
Nannobrachium achirus genome assembly, chromosome: 6.
OY997643.1:53355459-53355478
TGCTCTTTAGAAGCAGATCATTTTCAGTTT53355459GCGAAAATGATCTTTGGGAAATGTAATAAATGCACTGGCATGTGTACTCA
NF017A07RT1F1049 Developing root Medicago truncatula cDNA clone NF017A07RT 5', mRNA sequence.
BE319635.2:213-232
CCGAAGAAGGTAATTCTTGGGATTTGATCA213GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
NF105B10EC1F1079 Elicited cell culture Medicago truncatula cDNA clone NF105B10EC 5', mRNA sequence.
BG448060.1:416-435
CCGAAGAAGGTAATTCTTGGGATTTGATCA416GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
PCS05175 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Unknown protein, mRNA sequence.
CA912713.1:199-218
CTGAAGAAGGTAATGGTGGGGATTTTGTAA199GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
PVEPSE2005F07.g Common bean seedling EST Library - PVEPSE2 Phaseolus vulgaris cDNA clone PVEPSE2005F07 5', mRNA sequence.
CB539454.1:449-468
CTGAAGAAGGTAATTCTTGGGATTTTGTAA449GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
PVEPSE2007F12.g Common bean seedling EST Library - PVEPSE2 Phaseolus vulgaris cDNA clone PVEPSE2007F12 5', mRNA sequence.
CB539600.1:462-481
CTGAAGAAGGTAATTCTTGGGATTTTGTAA462GCGAAAATGATCTTTGGGAAGGTGAAGACGCTTACTTAGACCAAGAAGAT
EST648511 KV3 Medicago truncatula cDNA clone KV3-50P21, mRNA sequence.
CB891542.1:231-250
CCGAAGAAGGTAATTCTTGGGATTTGATCA231GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
RTS_122_G09 Phaseolus vulgaris P- root EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV542617.1:350-369
CTGAAGAAGGTAATTCTTGGGATTTTGTAA350GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTACACCAAGAAGAT
EST1224271 MTY Medicago truncatula cDNA clone MTYA347, mRNA sequence.
DW015310.1:216-235
CCGAAGAAGGTAATTCTTGGGATTTGATCA216GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGGCGAAGAAGATTAT
MTYCY42TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV256567.1:408-427
CCGAAGAAGGTAATTCTTGGGATTTGATCA408GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
METB394TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY477530.1:578-597
CCGAAGAAGGTAATTCTTGGGATTTGATCA578GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
Pv034A_M13F_D02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE703223.1:347-366
CTGAAGAAGGTAATTCTTGGGATTTTGTAA347GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
Pv034A_M13R_D02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE703224.1:297-316
CTGAAGAAGGTAATTCTTGGGATTTTGTAA297GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
s13dLA81C04RT014_531191 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG094210.1:455-474
CCGAAGAAGTTAACTCTTGGGATTTGGTCA455GCGAAAATGATCTTTGGGAAAGTGGGGATGTTGACCAAGATGATTATGTC
MEUAX29TFB JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE346339.1:563-582
CCGAAGAAGGTAATTCTTGGGATTTGATCA563GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
PVUSE1NG-RP-012_F09_31MAR2009_043 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence.
GW885791.1:358-377
CTGAAGAAGGTAATTCTTGGGATTTTGTAA358GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
vsu-ars_004157_LI10Contig_4538 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO779124.1:399-418
CTGAAGAAGGTAATTCTTGGGATCTTGTAA399GCGAAAATGATCTTTGGGAAGGTGAAGACGCTAACTTAGACCAAGAAGAT
Vigna angularis mRNA, clone: VES07K23.
HX944983.1:503-522
CTGAAGAAGGTAGTTCTTGGGATCTTGTTA503GCGAAAATGATCTTTGGGAAGGTGAAGATGCTAACTCTAACTCAGACCAA
ocpggb0_0047_D12.ab1 Sesamum indicum seed ocggb Library Sesamum indicum cDNA 5', mRNA sequence.
JK049114.1:221-240
CTGAGGAAGGCAGTTCCTGGGACATGGTCA221GCGAAAATGATCTTTGGGAAGGTGGAAATGTGGAGTTAGACCCAGAAGAT
Medicago truncatula clone JCVI-FLMt-13N3 unknown mRNA.
BT139397.1:578-597
CCGAAGAAGGTAATTCTTGGGATTTGATCA578GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
Medicago truncatula clone JCVI-FLMt-9P22 unknown mRNA.
BT143711.1:408-427
CCGAAGAAGGTAATTCTTGGGATTTGATCA408GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-11.
CP023123.1:3270439-3270458
CAGAAGAAGTTAACTCTTGGGATTTGGTCA3270439GCGAAAATGATCTTTGGGAAAGTGGCGATGTTGACTCAGACCAAGAAGAT
Medicago truncatula chromosome 5 clone mth4-2e6, COMPLETE SEQUENCE.
CU326387.1:65548-65567
CAGAAGAAGGTAATTCTTGGGATTTGATCA65548GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
Medicago truncatula chromosome 5 clone mth4-4e12, COMPLETE SEQUENCE.
CU463045.2:4247-4266
CAGAAGAAGGTAATTCTTGGGATTTGATCA4247GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCTGACGAAGAAGATTAT
Medicago arabica genome assembly, chromosome: 7.
OX326970.1:17928103-17928122
CAGAAGAAGTTAATTCTTGGGATTTGATCA17928103GCGAAAATGATCTTTGGGAAGGTGTTGACACTTCCGACGAAGAAGATTAT
Hibiscus tridactylites genome assembly, chromosome: 22.
OY288286.1:12289316-12289335
ATATTGAACTAAGAAGAGAGTTGTTTGTAT12289316GCGAAAATGATCTTTGGGAAGAATTTCATGGCTTGTTGGTTCGTGTTTCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCCAAAGATCATTTTCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCCAAAGATCATTTTCGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.367 | 0.358 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCCAAAGATCATTTTCGC&k=0&no_gap=0&offset=0&limit=50
1.508 | 1.141 | search_minus_done; http://172.18.8.135:50400/match?q=GCGAAAATGATCTTTGGGAA&k=0&no_gap=0&offset=0&limit=44
1.525 | 0.017 | cgi_end;

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