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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 23:20:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus 6 BAC RP23-190K19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC153908.2:196206-196225
CCGAATTGTGCCTTCCTCTTGTTTCTATTC196206TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus 6 BAC RP24-186O21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence.
AC155721.7:140242-140261
CCGAATTGTGCCTTCCTCTTGTTTCTATTC140242TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971564.1:104133179-104133198
CCGAATTGTGCCTTCCTCTTGTTTCTATTC104133179TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971579.1:103940073-103940092
CCGAATTGTGCCTTCCTCTTGTTTCTATTC103940073TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971599.1:102660892-102660911
CCGAATTGTGCCTTCCTCTTGTTTCTATTC102660892TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus domesticus genome assembly, chromosome: 6.
OW971627.1:104487067-104487086
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC104487067TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAGCAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971641.1:104101585-104101604
CCGAATTGTGCCTTCCTCTTGTTTCTATTC104101585TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus molossinus genome assembly, chromosome: 6.
OW971663.1:103198305-103198324
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC103198305TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus spretus genome assembly, chromosome: 6.
OW971683.1:105259615-105259634
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC105259615TTCCCCCATCTTTTTCTTTCTATTCCCCCTAGGCCCCCAACAATTATGCT
Mus musculus genome assembly, chromosome: 6.
OW971714.1:103040354-103040373
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC103040354TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAGCAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971724.1:104089961-104089980
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC104089961TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAGCAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971747.1:103726914-103726933
CCGAATTGTGCCTTCCTCTTGTTTCTATTC103726914TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus musculus genome assembly, chromosome: 6.
OW971766.1:102686661-102686680
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC102686661TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971789.1:103587218-103587237
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC103587218TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OW971810.1:104423096-104423115
CCGAATTGTGCCTTCCTCTTGTTTCTATTC104423096TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus castaneus genome assembly, chromosome: 6.
OW971840.1:104052656-104052675
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC104052656TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OX389800.1:107540103-107540122
CCGAATTGTGCCTTCCTCTTGTTTCTATTC107540103TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Mus musculus genome assembly, chromosome: 6.
OX390150.1:105595890-105595909
CCGGTTTGTGCCTTCCTCTTGTTTCTATTC105595890TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAGCAATTATGC
Mus musculus genome assembly, chromosome: 6.
OX439020.1:109318292-109318311
CCGAATTGTGCCTTCCTCTTGTTTCTATTC109318292TTCCCCCATCTTTTTCTTTCTATTTCCCCCTAGGCCCCCAACAATTATGC
Micromys minutus genome assembly, chromosome: 1.
OZ004780.1:165577374-165577393
TTCTTTCTTCCCTGCCTGCCTTCTGTCTTA165577374TTCCCCCATCTTTTTCTTTCTTCATTAAATATTTCTTGATCCATGTGCAA
Myotis daubentonii genome assembly, chromosome: 2.
OY725360.1:155518067-155518086
ACACATTTTCTAAGACCTGCACTTATAAAT155518067TTCCCCCATCTTTTTCTTTCTAAGCACCATGTCATTTAGCCAAGTTAACA
Furcifer pardalis isolate Fpa_1 chromosome 2.
CP126891.1:105111847-105111866
CATTGAAGCCAGTAATTTCAATAGTTAGGC105111847TTCCCCCATCTTTTTCTTTCCCATTTGTAAAAGGAACATTTTCAGTCTTT
Anabas testudineus genome assembly, chromosome: 11.
LR132045.1:17021462-17021481
GTCCTTCTTGCTTGAAGTCTCTCATCACTT17021462TTCCCCCATCTTTTTCTTTCAATTTTGAATTATTTGTAACTTTTTAACTG
Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:642252166-642252185
CCCAGTCTTTCTTTCTCTCTCCCCCTTTCC642252166TTCCCCCATCTTTTTCTTTCTTGTCCCTATTCTGGGTGTTCATCTTCTCC
Geotrypetes seraphini genome assembly, chromosome: 11.
LR699156.1:132371295-132371314
GTATGCTTCCTCTCCTCCAGACCTCATTCC132371295TTCCCCCATCTTTTTCTTTCTTTCATCCTGCCCCCTTCTTTCTTTCTCTC
MAG: Anaerostipes hadrus isolate KR001_HIC_0005 chromosome, complete genome.
CP107212.1:60445-60464
CATATCCGCTGCGACAAGCTTAATCCTATT60445TTCCCCCATCTTTTTCTTTCATCTCCTTCTCATATGCCTCCCATAGATCC
OC__Ba0114I16.r OC__Ba Oryza coarctata genomic clone OC__Ba0114I16 3', genomic survey sequence.
CZ760993.1:8-27
TTTCCTC8TTCCCCCATCTTTTTCTTTCCGATCAAAAAAAGGCGGCAAATAGATAAGC
Rattus norvegicus DNA, BAC clone: RNB1-295A15, 3'end.
DH726012.1:141-160
CCAGTCTGTGCCTTCCTCTTATTTCTCTTC141TTCCCCCATCTTTTTCTTTCTTTCTCGCTTCTGCCCCCAACAATAATGCT
Rattus norvegicus clone CH230-7O24, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC095572.6:226773-226792
CCAGTCTGTGCCTTCCTCTTATTTCTCTTC226773TTCCCCCATCTTTTTCTTTCTTTCTCGCTTCTGCCCCCAACAATAATGCT
Coffea arabica microsatellite DNA, clone I2-3CTG.
AJ308779.1:37-56
CCCAAATCTTTCTTTAATACTACACATTTT37TTCCCCCATCTTTTTCTTTCCCAACTTTCGAAACTTTGTGTGTGTGTGTG
Carpinus viminea chromosome 1.
CP054667.1:29405662-29405681
GCGTAAAAGTTCAATGAGTCTTTATAAAGT29405662TTCCCCCATCTTTTTCTTTCTCGAAAATAAAAACCACAACCTCCAAAATA
Secale cereale genome assembly, chromosome: 3R.
LR738711.1:179610949-179610968
GCACTAGCACGCCGAAAGGCCATATACTTG179610949TTCCCCCATCTTTTTCTTTCCCTTTTAAGCAGAAGGCACGTTCCTCGCGC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828192.1:8876290-8876309
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG8876290TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:138143626-138143645
ACCGTTGGGGTATTGACATCATGGTCCCTT138143626TTCCCCCATCTTTTTCTTTCCTATACATCCTTGTCGCGGTAGACTACCTT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460051.1:9724655-9724674
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG9724655TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460051.1:470049836-470049855
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG470049836TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare genome assembly, chromosome: 5H.
OX460135.1:9773331-9773350
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG9773331TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare genome assembly, chromosome: 5H.
OX460191.1:11328118-11328137
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG11328118TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare genome assembly, chromosome: 5H.
OX460247.1:11400085-11400104
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG11400085TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare genome assembly, chromosome: 5H.
OX460275.1:13357370-13357389
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG13357370TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590766.1:473386766-473386785
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG473386766TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Hordeum vulgare genome assembly, chromosome: 5H.
OX638753.1:12393827-12393846
TGGTGGGCCTAAGGCCCACCTAAGTTAGGG12393827TTCCCCCATCTTTTTCTTTCCCCTGCGCCATGGGCTGAGTGGGGAGGCGC
Humulus lupulus genome assembly, chromosome: 9.
OY720656.1:65194495-65194514
GATGTACACTCTATACACGGAGAAATATCT65194495TTCCCCCATCTTTTTCTTTCCTCCCTCGGCCTCGGGGTTACTCCCTTCAT
Anaerostipes hadrus strain BPB5, complete genome.
CP012098.1:269511-269530
CATATCCGCTGCGACAAGCTTAATCCTATT269511TTCCCCCATCTTTTTCTTTCATCTCCTTCTCATATGCCTCCCATAGATCC
Coprococcus comes strain DFI.3.84 chromosome, complete genome.
CP143955.1:2668959-2668978
ACAATGCATATCTGCTACTTTCATTTTCTA2668959TTCCCCCATCTTTTTCTTTCTTATAATATCTACCGTATGTGATCCCGCAC
Anaerostipes hadrus isolate MGYG-HGUT-02528 genome assembly, chromosome: 1.
LR699012.1:269511-269530
CATATCCGCTGCGACAAGCTTAATCCTATT269511TTCCCCCATCTTTTTCTTTCATCTCCTTCTCATATGCCTCCCATAGATCC
Macrobrachium nipponense isolate FS-2020 chromosome 2.
CP062027.1:143666305-143666324
ATCTAAGTAAGTTTTACCAACGAATGCTGA143666305TTCCCCCATCTTTTTCTTTCTCTTTGGAATAAACCAATGCTATTTCTATC
Aelia acuminata genome assembly, chromosome: X.
OU426980.1:141058011-141058030
ACTTAGTGAGTCAAGGCCTCCTTTAGAAGA141058011TTCCCCCATCTTTTTCTTTCTAATAATGAATAATGTCAGTATTTAAATGA
Drymonia ruficornis genome assembly, chromosome: 2.
OX401905.1:5467229-5467248
GCTAAATAAACATTACTCTTTTCAATATCT5467229TTCCCCCATCTTTTTCTTTCAAGTTCTGCATATTACCAATAGGTAATAAT
Odontocerum albicorne genome assembly, chromosome: 24.
OX463862.1:866503-866522
ATTTTTGTAAGGACTTTACCATCTTTTCCT866503TTCCCCCATCTTTTTCTTTCCACCATCTTTTCCTTTCCACCATCATTTCC
Agrotis clavis genome assembly, chromosome: 15.
OX940932.1:1217394-1217413
CAAGGGGAACAAAATAATGAAAAAAAATCT1217394TTCCCCCATCTTTTTCTTTCAATAAATTCATCGTAATTGGTCCAGCAGTT
Pedicia rivosa genome assembly, chromosome: 3.
OY720153.1:9153344-9153363
AAATTGTGTTACAATAAATAATTAAATTTT9153344TTCCCCCATCTTTTTCTTTCACCTTCAACATCGATGATGTCAACAAATTG
Pyrrhosoma nymphula genome assembly, chromosome: X.
OY754332.1:64091937-64091956
CTTCTTCTTTTCTAGCTTCAACTGTTCTAA64091937TTCCCCCATCTTTTTCTTTCTTTCCTCTCTCTGGATCTGACTCATTCTTT
Alviniconcha strummeri genome assembly, chromosome: 1.
OY757541.1:24188252-24188271
ATTTTTGTCTGATGTAATTGCAGCTTCTTT24188252TTCCCCCATCTTTTTCTTTCTTCGTCCACGATTCATTACAACTGGCCCAT
Maratus michaelseni genome assembly, chromosome: 6.
OZ007592.1:236117572-236117591
TTTATTTTGTAGAGCTTTTAAATTGCAATT236117572TTCCCCCATCTTTTTCTTTCTTTCTAAATCACGTTGATTTGTTTAATTGA

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