GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:49953633-49953652
AACCTTCGAGTGAGACCCTGACATGTTCTC49953633TTCCCCTGCACTTTGCTTCTCTCTTATCTGCAAAAGAATGCTGCCGGAAA
Canis lupus familiaris breed Labrador retriever chromosome 12a.
CP050578.1:5932717-5932736
AACCTTAGAGTGAGACCCTAACATGTTTTC5932717TTCCCCTGCACTTTGCTTCTCTCTTATCTGTAAAAGAATGTTGCTGGAAA
Canis lupus familiaris breed Labrador retriever chromosome 12b.
CP050616.1:5941811-5941830
AACCTTAGAGTGAGACCCTAACATGTTTTC5941811TTCCCCTGCACTTTGCTTCTCTCTTATCTGTAAAAGAATGTTGCTGGAAA
Canis lupus genome assembly, chromosome: 12.
HG994392.1:7141798-7141817
AACCTTAGAGTGAGACCCTAACATGTTTTC7141798TTCCCCTGCACTTTGCTTCTCTCTTATCTGTAAAAGAATGTTGCTGGAAA
Quercus petraea EST, clone WZ0AQPAG2YP20NM1.
FN742204.1:727-746
CAATTCACTGATATCTTTGTGAAGACGTAA727TTCCCCTGCACTTTGCTTCTTGACGGGTGTCTTTCCATTAGCATTTTCTG
Quercus robur leave EST, clone LG0AAA1YP02RM1, similar to UBC12_ARATH NEDD8-conjugating enzyme Ubc12 . - Arabidopsis thaliana.
FP027915.1:732-751
CAATTCACTGAAATCTTTGTGAAGACGTTA732TTCCCCTGCACTTTGCTTCTTGACAGGTGTC
EG-E11_002_A04 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_002_A04, mRNA sequence.
JK668591.1:132-151
AAGCTCACCAATATCTTTATGAAGGCGCAA132TTCCCCTGCACTTTGCTTCTTCACAGGAGCCCTTCCATTGGCATTTGCAG
EG-E11_002_G07 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_002_G07, mRNA sequence.
JK668664.1:132-151
AAGCTCACCAATATCTTTATGAAGGCGCAA132TTCCCCTGCACTTTGCTTCTTCACAGGAGCCCTTCCATTGGCATTTGCAG
TSA: Lactuca sativa Letassy_X1_7998 mRNA sequence.
JI596180.1:567-586
TAGTTCACTTATGTCCTTATGAACACGCAA567TTCCCCTGCACTTTGCTTCTTAAAGGATCCATTTCCGTTTGCATTTTTAG
Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:30128682-30128701
TGAAAGGTAAAAACCTCTATGAAGACGTAA30128682TTCCCCTGCACTTTGCTTCTTCACTAGGCCCTTCTCCTTTACATTTTCTT
Quercus variabilis isolate HB chromosome 11b.
CP129443.1:3097785-3097804
AAAGGACTCATAACCTTTGTGAAGACGTAA3097785TTCCCCTGCACTTTGCTTCTTGACGGGTGTCTTTCCATTAGCACTTTCTG
Fragaria x ananassa cultivar Benihoppe chromosome 8.
CP139768.1:27339102-27339121
TAAAAGGCTGAGACCTCTTTGAACGCGTAA27339102TTCCCCTGCACTTTGCTTCTTGACAGGCGCCTTCTCTTTTGCATTGTCTA
Fragaria x ananassa cultivar Benihoppe chromosome 6.
CP139770.1:27768277-27768296
GAAAAGGCTGAGACCTCTTTGAACGCGTAA27768277TTCCCCTGCACTTTGCTTCTTGACAGGCGCCTTCTCTTTTGCATTGTCTA
Fragaria x ananassa cultivar Benihoppe chromosome 5.
CP139771.1:27302931-27302950
GAAAAGGCTGAGACCTCTTTGAGCGCGTAA27302931TTCCCCTGCACTTTGCTTCTTGACAGGCGCCTTCTCTTTTGCATTGTCTA
Ananas comosus genome assembly, chromosome: 16.
LR828296.1:6652346-6652365
TGAATGCAACAAACCTTTATGAAGACGTAA6652346TTCCCCTGCACTTTGCTTCTTGATAGGAGCCCTTCCATTTGCACTTGCAG
Ananas comosus var. bracteatus genome assembly, chromosome: 15.
LR862143.1:12913433-12913452
TGAATGCAACAAACCTTTATGAAGACGTAA12913433TTCCCCTGCACTTTGCTTCTTGATAGGAGCCCTTCCATTTGCACTTGCAG
Chionographis japonica genome assembly, chromosome: 3.
OX393551.1:35751964-35751983
AAGTGCAGACCTACCTTTGTGAAGACGTAG35751964TTCCCCTGCACTTTGCTTCTTGATAGTACCCTTTCCAGTGGCATTTCCAG
Comarum palustre genome assembly, chromosome: 18.
OX637589.1:18184252-18184271
AAAACGGGTGAGACCTCTTTGAACACGTAA18184252TTCCCCTGCACTTTGCTTCTTGACTGGCGCCTTCTCTTTTGCATTGTCTA
Andrena carantonica genome assembly, chromosome: 1.
OX731548.1:68496121-68496140
GATCTTCAATTTTTTTTACAGACAATGTGC68496121TTCCCCTGCACTTTGCTTCTTTTTTTTTTAAATGAAACTACAAACCTATG
Myotis daubentonii genome assembly, chromosome: 6.
OY725365.1:91935589-91935608
CTTCTAGCAACATTCTTTGACAGATAAGAG91935589AGAAGCAAAGTGCAGGGGAAGAGAACAAGTTAGGGTGTCACTCCGAGCTG
QGF24K21.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF24K21, mRNA sequence.
BQ992091.1:230-249
CTAAAAATGCAAACGGAAATGGATCCTTTA230AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
QGJ6G12.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ6G12, mRNA sequence.
BU014085.1:230-249
CTAAAAATGCAAACGGAAATGGATCCTTTA230AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
pam01-4ms2-f01 Pam01 Persea americana cDNA clone pam01-4ms2-f01 5', mRNA sequence.
CK749503.1:156-175
CTGAAAATGCCAATGGTAGGGCACCGGTAA156AGAAGCAAAGTGCAGGGGAATTACGTCTTCATAAAGACATCAGCGAGTTG
pam01-4ms3-f01 Pam01 Persea americana cDNA clone pam01-4ms3-f01 5', mRNA sequence.
CK753968.1:156-175
CTGAAAATGCCAATGGTAGGGCACCGGTAA156AGAAGCAAAGTGCAGGGGAATTACGTCTTCATAAAGACATCAGCGAGTTG
A02_92_02 Flower bud cDNA library from Lycoris longituba Lycoris longituba cDNA clone A02_92_02.ab1, mRNA sequence.
CN451550.1:137-156
CTGCAAATGCCAATGGAAGAGCTCCTGGAA137AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGATATTAGCGAGCTG
Quercus mongolica subsp. crispula mRNA, clone: Qm_001_02D11, 5'end sequence, expressed in inner bark.
DB996299.2:221-240
CACAAAATGCTAATGGAAAGACACCCGTCA221AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Castanopsis sieboldii mRNA, clone: Cc_TUM05_04D24, 5'end sequence, expressed in inner bark.
DC600784.1:169-188
CAGAAAATGCTAATGGAAAGACACCCGTCA169AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Ost2T_448 Oak tissue culture growing 2 days in hypertonic medium Quercus robur cDNA 5', mRNA sequence.
DN950785.1:139-158
CAGAAAATGCTAATGGAAAGACACCCGTCA139AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
she01-22ms2-e12 She01 Saruma henryi cDNA clone she01-22ms2-e12 5', mRNA sequence.
DT581899.1:318-337
CTGAGAATGCTAATGGTAAAGCACCTGTTA318AGAAGCAAAGTGCAGGGGAATTACGGCTTCATAAAGATATTATTGAGTTG
she01-19ms4-f02 She01 Saruma henryi cDNA clone she01-19ms4-f02 5', mRNA sequence.
DT582839.1:162-181
CTGAGAATGCTAATGGTAAAGCACCTGTTA162AGAAGCAAAGTGCAGGGGAATTACGGCTTCATAAAGATATTATTGAGTTG
pam01-27ms2-h05 Pam01 Persea americana cDNA clone pam01-27ms2-h05 5', mRNA sequence.
DT592847.1:123-142
CTGAAAATGCCAATGGTAGGGCACCGGTAA123AGAAGCAAAGTGCAGGGGAATTACGTCTTCATAAAGACATCAGCGAGTTG
CLPY8999.b1_N17.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY8999, mRNA sequence.
DW097969.1:226-245
CTAAAAATGCAACCGGAAATGGATCCTTTA226AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAAGACATAAGTGAGCTA
CLRY2512.b1_O04.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRY2512, mRNA sequence.
DW114397.1:226-245
CTAAAAATGCAAACGGAAATGGATCCTTTA226AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
CLVX9007.b1_N19.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX9007, mRNA sequence.
DW156948.1:240-259
CTAAAAATGCAAACGGAAATGGATCCTTTA240AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
CLVY1275.b1_F07.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY1275, mRNA sequence.
DW160686.1:210-229
CTAAAAATGCAAACGGAAATGGATCCTTTA210AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
CNMS6254.b1_L03.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS6254, mRNA sequence.
EH746786.1:203-222
CTGAAAATGCAACCGCAAGGGGACCCTTAA203AGAAGCAAAGTGCAGGGGAATTGCGTCTTCATAAAGACATAAGCGAGCTG
CNMS9242.b1_C07.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS9242, mRNA sequence.
EH749892.1:44-63
GCTGAAATGCAACCGCAAGGGGACCCTTAA44AGAAGCAAAGTGCAGGGGAATTGCGTCTTCATAAAGACATAAGCGAGCTG
CHTS5878.b2_L05.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS5878, mRNA sequence.
EL467108.1:333-352
CTGGAAATGCCAATGGAAGGGGACCCTTAA333AGAAGCAAAGTGCAGGGGAATTACGTCTTCATAAAGACATAAGTGAACTG
pOP-EO02713_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02713 5', mRNA sequence.
EY413614.1:165-184
CTGCAAATGCCAATGGAAGGGCTCCTGTGA165AGAAGCAAAGTGCAGGGGAATTGCGCCTTCATAAAGATATTGGTGAGCTT
Pam01b_124_A02_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lff_B04 5', mRNA sequence.
FD509427.1:222-241
CTGAAAATGCAAATGGAAGAGCACCGGGAA222AGAAGCAAAGTGCAGGGGAATTGCGTCTTCATAAAGATATTAGTGAGCTG
011204KAKA004212HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment Actinidia deliciosa cDNA clone KAKAA00421, mRNA sequence.
FG467772.1:97-116
CTGAAAACACCCATGGGACAACAGGTGTCA97AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATTGGTGAACTG
Quercus petraea EST, clone WZ0AQPAG2YP20CM1.
FN745848.1:39-58
CAGAAAATGCTAATGGAAAGACACCCGTCA39AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Quercus robur xylem EST, clone LG0AAB22YB07RM1, similar to UBC12_ARATH NEDD8-conjugating enzyme Ubc12 . - Arabidopsis thaliana.
FP037164.1:162-181
CAGAAAATGCTAATGGAAAGACACCCGTCA162AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Quercus robur xylem EST, clone LG0AAB11YH21RM1, similar to UBC12_ARATH NEDD8-conjugating enzyme Ubc12 . - Arabidopsis thaliana.
FP040773.1:162-181
CAGAAAATGCTAATGGAAAGACACCCGTCA162AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Quercus robur root EST, clone LG0AAD9YI09RM1.
FP051449.1:377-396
CAGAAAATGCTAATGGAAAGACACCCATCA377AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGTGGCAAGGATGACT
Quercus robur root EST, clone LG0AAD48YL16RM1, similar to UBC12_ARATH NEDD8-conjugating enzyme Ubc12 . - Arabidopsis thaliana.
FP054778.1:139-158
CAGAAAATGCTAATGGAAAGACACCTGTCA139AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
Quercus robur EST, clone WZ0AQRAS10YA06CM1.
FR624472.1:17-36
GGAAAGACACCTGTCA17AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGATATCAGTGAATTG
CCHS11190.b1_K13.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS11190, mRNA sequence.
GE524047.1:190-209
GCTGAAAATTCTAATGGAAAGCCTCCGTCA190AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGATATAAGTGAACTA
CCHS11635.b1_F05.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS11635, mRNA sequence.
GE524529.1:238-257
CTGAAAATTCTAATGGAAAGCCTCCGGTCA238AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGATGTGAGTGAACTA
CCHS15137.b1_B17.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS15137, mRNA sequence.
GE528237.1:119-138
CTGAAAATTCTAATGGAAAGCCTCCGGTCA119AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGATATAAGTGAACTA
CCHS23938.b1_D09.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS23938, mRNA sequence.
GE537468.1:82-101
CTGAAAATTCTAATGGGAAGCCCCCGGTTA82AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGATATAAGTGAACTA
TSA: Lactuca serriola Serrassy_T_P2_23020 mRNA sequence.
JO045841.1:229-248
CTAAAAATGCAAACGGAAATGGATCCTTTA229AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGACATAAGTGAACTA
TSA: Rhynchophorus ferrugineus contig21138.Rhfeelpa mRNA sequence.
JR488601.1:101-120
CTGCAAATGCCAATGGAAGGGCTCCTGTCA101AGAAGCAAAGTGCAGGGGAATTGCGCCTTCATAAAGATATTGGTGAGCTT
Quercus dentata isolate Qdleaves-2020 chromosome 11.
CP116454.1:49473425-49473444
CAGAAAATGCTAATGGAAAGACACCCGTCA49473425AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Quercus dentata isolate Qdleaves-2020 chromosome 11.
CP116454.1:50002795-50002814
CAGAAAATGCTAATGGAAAGACACCCGTCA50002795AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Rhododendron vialii isolate Sample 1 chromosome 11b.
CP127062.1:36608088-36608107
CTGAAAACCCAAATGGGACAGCACCTGTCA36608088AGAAGCAAAGTGCAGGGGAATTACGCCTTCACAGAGGTATACTGTCGTCT
Rhododendron vialii isolate Sample 1 chromosome 11a.
CP127075.1:36647345-36647364
CTGAAAACCCAAATGGGACAGCACCTGTCA36647345AGAAGCAAAGTGCAGGGGAATTACGCCTTCACAGAGGTATACTGTCGTCT
Quercus variabilis isolate HB chromosome 11b.
CP129443.1:42490585-42490604
CAGAAAATGCTAATGGAAAGACACCCGTCA42490585AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Quercus variabilis isolate HB chromosome 11a.
CP129455.1:45855895-45855914
CAGAAAATGCTAATGGAAAGACACCCGTCA45855895AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Fragaria x ananassa cultivar Benihoppe chromosome 7.
CP139769.1:760090-760109
TAGACAATGCAAAAGAGAAGGCGCCTGTCA760090AGAAGCAAAGTGCAGGGGAATTACGCGTTCAAAGAGGTCTCAGCCTTTTC
Quercus robur genome assembly, chromosome: 11.
OW028775.1:44070238-44070257
CAGAAAATGCTAATGGAAAGACACCCGTCA44070238AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Chionographis japonica genome assembly, chromosome: 5.
OX393553.1:12583668-12583687
TGGGAAATTCTGCTGGAAGGGGTCATACCA12583668AGAAGCAAAGTGCAGGGGAATTACGTGTTCACAAAGGTCTGTTTGCGCTT
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:194856752-194856771
ATGAGCTGGTGAAGAGGAATGCTGATCTGG194856752AGAAGCAAAGTGCAGGGGAAGGGTGTCGAGCTGGAGGCTAGTTTGAAGAC
Lactuca saligna genome assembly, chromosome: 0.
OX465086.1:71619111-71619130
CGAAAAATGCAAACCGAAATGGATCCTTTA71619111AGAAGCAAAGTGCAGGGGAACTGCGTGTTCACAAGGGTAAAACCTTTTAT
Lactuca saligna genome assembly, chromosome: 0.
OX465086.1:71622567-71622586
CGAAAAATGCAAACGGAAATGGATCCTTTA71622567AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGGTAAAACCTTTTAT
Lactuca saligna genome assembly, chromosome: 0.
OX465086.1:71625956-71625975
CGAAAAATGCAAACGGAAATGGATCCTTTA71625956AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGGTAAAACCTTTTAT
Lactuca saligna genome assembly, chromosome: 0.
OX465086.1:71629338-71629357
CGAAAAATGCAAACGGAAATGGATCCTTTA71629338AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAAGGGTAAAACCTTTTAT
Rosa rugosa genome assembly, chromosome: 3.
OY288193.1:51577857-51577876
TAGACAATGCAAAGGAGAAGGGACCAGTCA51577857AGAAGCAAAGTGCAGGGGAATTACGTGTTCAAAGAGGTCTGAGCTTTTCT
Quercus cerris genome assembly, chromosome: 8.
OY770013.1:43040082-43040101
CAGAAAATGCTAATGGAAAGACACCCGGCA43040082AGAAGCAAAGTGCAGGGGAATTACGTCTTCACAAAGGTTATGAGTCCTTT
Potentilla sterilis genome assembly, chromosome: 9.
OY821762.1:1186371-1186390
TAGACAATGCAAAGAAAAAGGCACCAGTCA1186371AGAAGCAAAGTGCAGGGGAATTGCGTGTTCAAAAAGGTCAGCCTTTTCTA
Viola odorata genome assembly, chromosome: 7.
OY829543.1:52952142-52952161
CAGAAAGTGGTAAAGGCAACTTGCATGTTA52952142AGAAGCAAAGTGCAGGGGAATTGCGTGTTCATAGAGGTTTATCTTTTGAG
Viola odorata genome assembly, chromosome: 8.
OY829544.1:2047606-2047625
CAGAAAGTGGTAAAGGCAACATGCATGTTA2047606AGAAGCAAAGTGCAGGGGAATTACGTGTTCATAGAGGTTTATCTTTTGAG
Geranium rotundifolium genome assembly, chromosome: 9.
OY987319.1:11467285-11467304
CTGCAAATTCAAATGGCAAGCCCCCAGTCA11467285AGAAGCAAAGTGCAGGGGAATTGCGTCTTCACAAAGGTTTTTTGTTTTGT
Andrena trimmerana genome assembly, chromosome: 1.
OX578059.1:38578499-38578518
CATAGGTTTGTAGTTTCATTTAAAAAAAAA38578499AGAAGCAAAGTGCAGGGGAAGCACATTGTCTGTAAAAAAAATTGAAGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCCCTGCACTTTGCTTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCCCTGCACTTTGCTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.491 | 0.482 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCCCTGCACTTTGCTTCT&k=0&no_gap=0&offset=0&limit=50
2.700 | 2.209 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGCAAAGTGCAGGGGAA&k=0&no_gap=0&offset=0&limit=31
2.735 | 0.036 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).