GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:17:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lutra lutra genome assembly, chromosome: 4.
LR738406.1:6078555-6078574
TTATAGCTCAGTTAAAAATAATTTCTGACT6078555TTCCTCGCAATTTCTTCTTCATCCTATGAATTATTTGGAAGTATGTTGTA
Danio kyathit genome assembly, chromosome: 17.
LR812535.1:59196055-59196074
TATGGAAGTCAGGGGTTGTTTTTTCCAGTT59196055TTCCTCGCAATTTCTTCTTCCTTTGTGTTCAACAGAAGAAAGAAAAGTGG
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:54782257-54782276
TGATGATGGAGAAACAAGATTTGCTGTTGG54782257TTCCTCGCAATTTCTTCTTCTTCTCCTCCTATATGAGATGGATTCTGATG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:118338089-118338108
TGATGATGCAGAAACAAGATTTGCTGTTGG118338089TTCCTCGCAATTTCTTCTTCTTCTCCTCCTCCTCCTATATGAGATGGATT
Saururus chinensis isolate CL-2023b chromosome 5.
CP141144.1:17180236-17180255
TCATGTCTTTTTGTACTCGCTATGTTCTTG17180236TTCCTCGCAATTTCTTCTTCGCCTCTGACATGAATGTTTCTTCCAAATAA
XXX.
LR721781.1:16868068-16868087
CGGACTCAACGACGTCAGGCGAATATTTCT16868068TTCCTCGCAATTTCTTCTTCAACTCGATCACTGTATGTGCTCTGAAATAA
Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:85356186-85356205
TGCATAATTTTCTTGATTTGTGTTCTTCTT85356186TTCCTCGCAATTTCTTCTTCGCAACCTAGATCTTTTCCTGGTTCTCATGC
Dolichovespula sylvestris genome assembly, chromosome: 23.
OU964983.1:4922872-4922891
TTCGCGAGTAACTCTTAAAACACGACCTCT4922872TTCCTCGCAATTTCTTCTTCTACCTCGTTCGTACACAGTCCACGTACGTC
Euplexia lucipara genome assembly, chromosome: 4.
OV179146.1:2628697-2628716
CGTCGAGATACATCTCTCAAGCAAGTTGGT2628697TTCCTCGCAATTTCTTCTTCCAATAATAAAACTAAACCTACGCGAACTTA
Gibbula magus genome assembly, chromosome: 4.
OW388292.1:57603429-57603448
TGGGTAATGTTCTCCTGATGACAACATTCC57603429TTCCTCGCAATTTCTTCTTCGTGTCTCGTCGTGCCTGGACAAACGCAATC
Acrobasis repandana genome assembly, chromosome: 15.
OY756229.1:13701391-13701410
AGCTGTGCTGCTTTGGAGCCTGGGATGCGC13701391TTCCTCGCAATTTCTTCTTCAAATATAATATTATCAATGGTTACCCGAGG
Pungitius pungitius genome assembly, chromosome: 2.
OX438542.1:1726483-1726502
GAAAAGTACAAGGAAAGGAACGAGGAGGAA1726483GAAGAAGAAATTGCGAGGAAACAAAAGAAGAGAAAAACAAAGCAAAGACA
GR__Ea43M24.r GR__Ea Gossypium raimondii cDNA clone GR__Ea43M24 3', mRNA sequence.
CO080378.1:275-294
CAGAATCCATCTCATATAGAAGGAGGAGAA275GAAGAAGAAATTGCGAGGAACCAACAGCAAATCTTGTTTCTCCATCATCA
Gossypioides kirkii chromosome KI_01.
CP032244.1:4571745-4571764
AATCCATCTCATATAGAAGGAGGAGAAGAA4571745GAAGAAGAAATTGCGAGGAACCAACAGCAGATCTTGTTTCTCCATCATCA
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:5580105-5580124
CAGAATCCATCTCATATAGAAGGAGGAGAA5580105GAAGAAGAAATTGCGAGGAACCAACAGCAAATCTTGTTTCTCCATCATCA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:7310038-7310057
AATCCATCTCATATAGGAGGAGGAGGAGAA7310038GAAGAAGAAATTGCGAGGAACCAACAGCAAATCTTGTTTCTCCATCATCA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:7517548-7517567
CAGAATCCATCTCACTTTGTAGGAGGAGAA7517548GAAGAAGAAATTGCGAGGAACCAACAGCAAATCTTGTTTCTCCATCATCA
Dolichovespula media genome assembly, chromosome: 21.
OU426871.1:369288-369307
GACGTACGTGGACTGTGTACGAACGAGGTA369288GAAGAAGAAATTGCGAGGAAAGAGGTCGCGTTTCAAGAGTTACGCGTGAA
Platycheirus albimanus genome assembly, chromosome: 1.
OU696696.1:234235036-234235055
TTGGACGATGGGTCATCGGTAACGTTAATG234235036GAAGAAGAAATTGCGAGGAAGTTGAAAGTATCAGGAAAGCCAAGACCACT
Cepaea hortensis genome assembly, chromosome: 2.
OY992877.1:98472137-98472156
ATAGTAACAAGAGAATATCTGCCTAACTGA98472137GAAGAAGAAATTGCGAGGAAACCTCTCCAACAATGGAAACGACTTACGCT
Aphodius sticticus genome assembly, chromosome: 3.
OZ014508.1:5937695-5937714
ACGCTGAATAAATTAATCTGAAATGCTTGC5937695GAAGAAGAAATTGCGAGGAAACTCGACTCATTAATTGTTGATTTCTAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCCTCGCAATTTCTTCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTCGCAATTTCTTCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.149 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTCGCAATTTCTTCTTC&k=0&no_gap=0&offset=0&limit=50
0.280 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAAGAAATTGCGAGGAA&k=0&no_gap=0&offset=0&limit=39
0.286 | 0.007 | cgi_end;

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