GGGenome | Results

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2025-04-06 10:34:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Dianthus caryophyllus mRNA, clone: CES08K01, 5' end sequence.
FY385360.1:339-358

AACCCAATCATTCAATGTTGAGCAGAAAGT339TTCCTCGTAAACCCAGTTGCGCAGTTTTGCAGACCATTCCCTCATTTTCG

Dianthus caryophyllus mRNA, clone: CFES02M03, 5' end sequence.
FY394834.1:348-367

AACCCAATCATTCAATGTTGAGCAGAAAGT348TTCCTCGTAAACCCAGTTGCGCAGTTTTGCAGACCATTCCCTCATTTTCG

TSA: Dianthus caryophyllus mRNA, contig: CAK09.647.C1.
FX297863.1:360-379

AACCCAATCATTCAATGTTGAGCAGAAAGT360TTCCTCGTAAACCCAGTTGCGCAGTTTTGCAGACCATTCCCTCATTTTCG

Netelia virgata genome assembly, chromosome: 1.
OX637863.1:54116574-54116593

CGTTCATTGCCGCCATCGTCGTCGCCGTCG54116574TTCCTCGTAAACCCAGTTGCTGTTGAGCCTTGACGAATGGTGACTGCGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.281 | 0.272 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTCGTAAACCCAGTTGC&k=0&no_gap=0&offset=0&limit=50
0.309 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=GCAACTGGGTTTACGAGGAA&k=0&no_gap=0&offset=0&limit=46
0.310 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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