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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 17:10:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Medicago truncatula clone mth2-11a6, complete sequence.
AC146788.13:101865-101884
TTTGTTCCTCAACCAGAGTCTTCCTTAAGC101865TTCCTCTACAACTACAACCAATGCTCATATCAAGGTAAAAATTATCATCA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:516347564-516347583
CCGTGCTGCCGGTGCCGCTCCCTCCCCCTT516347564TTCCTCTACAACTACAACCACACATCCACCACATCCCCAAATTCCGATGA
Citrus reshni microsatellite DNA, locus mCrCIR04H12.
FR692371.1:127-146
ATTTTCTCTCTTTATTACCATCCCTCCTCA127TTCCTCTACAACTACAACCATTATTAGCCTTACTCAAATTCCAATTTTGA
Fagus sylvatica genome assembly, chromosome: 5.
OU015765.1:34837611-34837630
GGTTTCCTATTCAATTTTTTCAACATATAA34837611TTCCTCTACAACTACAACCAAAATAACAAAGATAATTTTTTTTTTAAATA
Avena insularis genome assembly, chromosome: 4D.
OU342348.1:30405423-30405442
CTGTGCTGCCGGTGTCCCTCCCTCTCTCTT30405423TTCCTCTACAACTACAACCACACATCCACCACCTCCCCAAATTTCGATGA
Solanum dulcamara genome assembly, chromosome: 11.
OX359262.1:56432542-56432561
AAGTTGGTGAGTCGTGACTTCCTAGTATAC56432542TTCCTCTACAACTACAACCACTTCCAAAAAGAATTACTCCCTTTTTTCTG
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:19361373-19361392
AATTTCTCTCTTTATTACCATCCCTCCTCC19361373TTCCTCTACAACTACAACCATTATTAGCCTTACTCAAATTCCAATTTTGA
Primula veris genome assembly, chromosome: 10.
OY821749.1:27806288-27806307
TTTGTTTTCCGACCCGACAATTCTTTGAGC27806288TTCCTCTACAACTACAACCATGACCACTTTCCAGGTATATATATATATAT
Primula vulgaris genome assembly, chromosome: 2.
OY987213.1:39795646-39795665
TTTGTTTTCCGACCCGACAATTCTTTGAGC39795646TTCCTCTACAACTACAACCATGACCACTTTCCAGGTATATATATATATAT
Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:523602092-523602111
AAGCATCCTTAAGAATTCCAAATATTGGCA523602092TTCCTCTACAACTACAACCATAAGCATACCGTGGTCACTGCAAAAGAGCC
Cistogaster globosa genome assembly, chromosome: 2.
OW569404.1:10567403-10567422
CCTCGTATAAGATCAGTCAAAGTAAAAAAA10567403TTCCTCTACAACTACAACCAAAATATTATTTAGGTGATCAGCTGCCAAGG
Machimus rusticus genome assembly, chromosome: 1.
OX608049.1:8669840-8669859
ATATTAAGGCCGGAATAGAACTTTCCTACT8669840TTCCTCTACAACTACAACCACACGGCATGTAATCAGTCGGGAAGAAAGAG
Ennomos erosarius genome assembly, chromosome: 1.
OY756978.1:5436926-5436945
GTCTATAGAGCTGTCATCTTCTTCCTTGAC5436926TTCCTCTACAACTACAACCATCTCCACGTCCCTATGGGACCCGGTGACCT
Eudasyphora cyanicolor genome assembly, chromosome: 3.
OZ005736.1:85097815-85097834
CGTTCTATAGAACTATACGACTACAACTAC85097815TTCCTCTACAACTACAACCATAGGATCGGACCAGTTTGTCCGCATCATTT
Medicago truncatula clone mth2-26o22, complete sequence.
AC139525.3:17862-17881
TGATGATAATTTTTACCTTGATATGAGCAT17862TGGTTGTAGTTGTAGAGGAAGCTTAAGGAAGACTCTGGTTGAGGAACAAA
Cicer arietinum chromosome Ca4.
CP039334.1:21831465-21831484
GTTCTTATGATTGTACCTTGAAATGAGGTT21831465TGGTTGTAGTTGTAGAGGAAGCTTAAGGAAGAGTCTGGTGGATGAAGAAA
Cicer arietinum chromosome Ca4.
CP040769.1:21831465-21831484
GTTCTTATGATTGTACCTTGAAATGAGGTT21831465TGGTTGTAGTTGTAGAGGAAGCTTAAGGAAGAGTCTGGTGGATGAAGAAA
Triticum timopheevii genome assembly, chromosome: 1At.
OY997261.1:159357770-159357789
AATGCTTGAAATCCTCTTCAAGCTGTAATT159357770TGGTTGTAGTTGTAGAGGAAAGGAAACGAACGAAGGGCCCGATCCTGCTT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:21711330-21711349
CTAACTTGTTCGTTCCTGGTTCACATAACC21711330TGGTTGTAGTTGTAGAGGAAGAAAGGAATGGAGGTGAAGAGTAATGAAGT
Mesoligia furuncula genome assembly, chromosome: Z.
OU744790.1:36263591-36263610
CTGGTAGGTAAATATGTCTTGATGGCCCTG36263591TGGTTGTAGTTGTAGAGGAAGGCCTCGCCTTTCATGCACGAGGCTGTGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCTCTACAACTACAACCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTCTACAACTACAACCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.193 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTCTACAACTACAACCA&k=0&no_gap=0&offset=0&limit=50
0.321 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTTGTAGTTGTAGAGGAA&k=0&no_gap=0&offset=0&limit=36
0.325 | 0.004 | cgi_end;

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