GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:25:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:87493189-87493208
CAGGAAAGGGGCGCTGACCAGCATTCTACT87493189TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Acomys kempi genome assembly, chromosome: 11.
OU015365.1:53286262-53286281
AGTCCTGGTCCTAAGGCCTTGGTATTGCTC53286262TTCCTCTGCTCTGTCTGTCAGTGAAGTTGGAGCCTAGTCACAGCCCTTTC
Acomys dimidiatus genome assembly, chromosome: 12.
OU015385.1:60990695-60990714
AGTCCTGGTCCTAAGGCCTTGGTATTGCTC60990695TTCCTCTGCTCTGTCTGTCAGTGAAGTTGGAGCCTAGTCACAGCCCTTTC
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:89114552-89114571
CAGGAAAGGGGCGCTGACCAGCACTCTACT89114552TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Onychomys leucogaster genome assembly, chromosome: 5.
OX460375.1:88811014-88811033
TCCATGACAACCTCTGACTGGAACTCTACT88811014TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Peromyscus eremicus genome assembly, chromosome: 5.
OX460398.1:79315280-79315299
CAGGAAAGGGGCACTGACCAGCACTCTAAT79315280TTCCTCTGCTCTGTCTGTCACTGGAGTCTACGCTAATTGGAGATGGATCT
Onychomys leucogaster genome assembly, chromosome: 5.
OX460422.1:89216128-89216147
TCCATGACAACCTCTGACTGGAACTCTACT89216128TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Onychomys arenicola genome assembly, chromosome: 5.
OX460446.1:87551273-87551292
CAGGAAAGGGGCGCTGACCAGCACTCTACT87551273TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Peromyscus eremicus genome assembly, chromosome: 5.
OX460470.1:80377313-80377332
CAGGAAAGGGGCACTGACCAGCACTCTAAT80377313TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:87493189-87493208
CAGGAAAGGGGCGCTGACCAGCATTCTACT87493189TTCCTCTGCTCTGTCTGTCACTGGAGTCTATGCTAATTGGAGATGGATCT
Symphodus melops genome assembly, chromosome: 14.
OX393538.1:3586199-3586218
GTCTTTTAAGGCCGCAAGATTTCTAGTGTC3586199TTCCTCTGCTCTGTCTGTCACCAGTGCTGCACTTTGAAAACCCACCCACC
Chelon labrosus genome assembly, chromosome: 3.
OY741291.1:28035549-28035568
TCCTCATCAGTGTCAGTGGCTTTCTGGCTG28035549TTCCTCTGCTCTGTCTGTCACACAGCACATTATATATACTGTATCTATGC
Scophthalmus maximus genome assembly, chromosome: 19.
OY978270.1:2502268-2502287
ATGGCTGTTATGTTCTGTGTTTTGTTACCT2502268TTCCTCTGCTCTGTCTGTCATGGATGGAGATTATAAAGAGATGCACACAC
TSA: Cannabis sativa PK00025.1_1.CasaPuKu mRNA sequence.
JP449594.1:90-109
TCTCTCTCTTTCTCACCATATTAATTCTAT90TTCCTCTGCTCTGTCTGTCACTTCAATTACACCACTCTGTTTTTTCATCT
Macrobrachium nipponense isolate FS-2020 chromosome 41.
CP062035.1:47693643-47693662
GTATTGTCCGTGCATTGGTTTGTTGTGCAG47693643TTCCTCTGCTCTGTCTGTCATTCTCACTGTCTCTGTATATTTCTGGGTCT
Macrobrachium nipponense isolate FS-2020 chromosome 11.
CP062045.1:98499730-98499749
GTATTGTCCGTGCATTGGCTTGTTGTGCCA98499730TTCCTCTGCTCTGTCTGTCATTCTCCTGTCTCTGTATATTTGTGGGTCTT
Macrobrachium nipponense isolate FS-2020 chromosome 4.
CP062050.1:93911041-93911060
GTATTGTCCGTGCATTGGTTTGTTGTGCCA93911041TTCCTCTGCTCTGTCTGTCACTCTCCTGTCTCTGTATATTTCTGGGTCTT
Onychomys arenicola genome assembly, chromosome: 8.
OX460354.1:11711983-11712002
AAAGTGGTTCCGTGCACCCACGAACAACAC11711983TGACAGACAGAGCAGAGGAAGGAAAGAGCACGGAGCTGACTGGCATGTCT
Sprattus sprattus genome assembly, chromosome: 19.
OY735303.1:28257717-28257736
GGGAATCAAAGTGATGGAGCTGGAATCTAT28257717TGACAGACAGAGCAGAGGAACCTGCCTAGGCCACATCTATCTGCCACTTG
Sprattus sprattus genome assembly, chromosome: 19.
OY735303.1:28264440-28264459
GGGAATCAAAGTGATGGAGCTGGAATCTAT28264440TGACAGACAGAGCAGAGGAACCTGCCTAGGCCACATCTATCTCTGCCACT
Macrobrachium nipponense isolate FS-2020 chromosome 42.
CP062051.1:4797260-4797279
AAGACCCAGAAGTATACAGAGACAGGAGAA4797260TGACAGACAGAGCAGAGGAATGGCACAACAAACCAATGCACGGACAATAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCCTCTGCTCTGTCTGTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTCTGCTCTGTCTGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTCTGCTCTGTCTGTCA&k=0&no_gap=0&offset=0&limit=50
0.461 | 0.277 | search_minus_done; http://172.18.8.135:50400/match?q=TGACAGACAGAGCAGAGGAA&k=0&no_gap=0&offset=0&limit=33
0.463 | 0.003 | cgi_end;

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