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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:49:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH056_01171m, 5' end sequence.
AB450728.1:248-270
AAAGAGACTGAAGCCCATGTCATCATCGGA248TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGAT
Mdfw2001o19.x1 Mdfw Malus domestica cDNA clone Mdfw2001o19 3' similar to SW:RLA2_PARAR P41099 60S ACIDIC RIBOSOMAL PROTEIN P2, mRNA sequence.
CN443920.1:319-341
AAAGAGACTGAATCCCATGTCATCATCGGA319TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Mdlr7003L07.g1 Apple_EST_Mdlr Malus domestica cDNA similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
DR990254.1:223-245
AAAGAGACTGAATCCCATGTCATCATCGGA223TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Mdas9011D21.g1 Apple_EST_Mdas Malus domestica cDNA similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
DR995746.1:232-254
AAAGAGACTGAATCCCATGTCATCATCGGA232TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Mdfwf2090G06_e21141.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
GO547670.1:307-329
AAAGAGACTGAATCCCATGTCATCATCGGA307TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Mdfrt3075J16_e10920.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO559642.1:327-349
AAAGAGACTGAATCCCATGTCATCATCGGA327TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Pyrus pyrifolia mRNA, clone: NFW2_01_55, 5' end sequence, expressed in flower bud.
HX762155.1:260-282
AAAGAGACTGAAGCCCATGTCATCATCGGA260TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGAT
Pyrus pyrifolia mRNA, clone: NFW2_01_71, 5' end sequence, expressed in flower bud.
HX762168.1:260-282
AAAGAGACTGAAGCCCATGTCATCATCGGA260TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGAT
Musa acuminata subsp. malaccensis isolate AA chromosome 3.
CP126372.1:42180262-42180284
TTTTGAGATCAGAAGGCTCACGTCGTCGGA42180262TTCCTCTTTCTCCTCGACCTTCTCTTCCTTCTTCGGCTCCTCGGCCGCCGGGG
Musa acuminata subsp. malaccensis isolate AA chromosome 14.
CP126383.1:42143029-42143051
TTTTGAGATCAGAAGGCTCACGTCGTCGGA42143029TTCCTCTTTCTCCTCGACCTTCTCTTCCTTCTTTGGCTCCTCGGCCGCCGGGG
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:2030167-2030189
GAGATTATCGAGGTAACTTACATCATCGGA2030167TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:2230836-2230858
GAGATTATCGAGGTAACTTACATCATCGGA2230836TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:7623798-7623820
AAAGAGACTGAAGCCCATGTCATCATCGGA7623798TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTAAGCCCATGTCATGCATAGAC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:1824557-1824579
GAGATTATCCGGGTAACTTACATCATCGGA1824557TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGGG
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:1747754-1747776
GAGATTATCCAGATAACTTACATCATCGGA1747754TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGGG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A03.
HG996468.1:39653220-39653242
TTTGGAGATCAAAAGGCTCACGTCGTCGGA39653220TTCCTCTTTCTCCTCGACCTTCTCTTCCTTCTTCGGCTCCTCGGCCGCCGGGG
Musa schizocarpa genome assembly, chromosome: S03.
LS990917.1:43961717-43961739
TTTGGAGATCAAAAGGCTCACGTCGTCGGA43961717TTCCTCTTTCTCCTCGACCTTCTCTTCCTTCTTCGGCTCCTCGGCCGCCGGGG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:32765537-32765559
GTGATGATCCAAATAACTTACCTCATCGGA32765537TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTGGCCTCAGCTGCAGCAGGAG
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:2113953-2113975
GAGATTATCGAGGTAACTTACATCATCGGA2113953TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:1782510-1782532
GAGATTATCCAGATAACTTACATCATCGGA1782510TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGAG
Malus domestica genome assembly, chromosome: 12.
OU744553.1:2166327-2166349
GAGATTATCGAGGTAACTTACATCATCGGA2166327TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Malus domestica genome assembly, chromosome: 12.
OU744964.1:1926160-1926182
GAGATTATCGAGGTAACTTACATCATCGGA1926160TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTCGCCTCAGCTGCAGCAGGGG
Malus domestica genome assembly, chromosome: 14.
OU744966.1:1875371-1875393
GAGATTATCCAGATAACTTACATCATCAGA1875371TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCTGCAGCAGGAG
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:1529929-1529951
CTATTGAACATAAATACTTACATCATCGGA1529929TTCCTCTTTCTCCTCGACCTTCTCCTCTTTCTTTGCCTCAGCCGCAGCAGGGG
Erodium maritimum genome assembly, chromosome: 4.
OY997591.1:66665163-66665185
ATATAAACAGGTAACACTCACATCATCTGA66665163TTCCTCTTTCTCCTCGACCTTCTCTTCTTTCTTCGCCTCAGCAGCTGCAGGTG
Mdfw2001o19.y1 Mdfw Malus domestica cDNA clone Mdfw2001o19 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CN444833.1:329-351
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG329AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mdfw2022i21.y1 Mdfw Malus domestica cDNA clone Mdfw2022i21 5' similar to TR:Q9ZRF5 Q9ZRF5 ACIDIC RIBOSOMAL PROTEIN P2A-4, mRNA sequence.
CN496533.1:3-25
GG3AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
000919AALA006051HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA006051, mRNA sequence.
CN863861.1:326-348
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG326AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
001203AAOA004331HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004331, mRNA sequence.
CN869516.1:270-292
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG270AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATT
010706AASB999208HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB999208, mRNA sequence.
CN882186.1:232-254
CTCCTGCTGCAGCTGACGCAAAGAAAGAGG232AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010812AASB002847HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB002847, mRNA sequence.
CN882571.1:346-368
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG346AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010811AASB001714HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB001714, mRNA sequence.
CN884458.1:346-368
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG346AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010621AASC999031HT (AASC) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASC999031, mRNA sequence.
CN884798.1:232-254
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG232AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010621AASC999052HT (AASC) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASC999052, mRNA sequence.
CN884813.1:232-254
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG232AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010621AASC999255HT (AASC) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASC999255, mRNA sequence.
CN884931.1:232-254
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG232AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
010630AAZA004076HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA004076, mRNA sequence.
CN897030.1:330-352
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG330AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
010701AAZA003265HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA003265, mRNA sequence.
CN897555.1:330-352
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG330AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
010702AAZA005296HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA005296, mRNA sequence.
CN898408.1:330-352
CCCCTGCTGCAGCTGAGGCGAACAAAGAGG330AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
021119ABMA001214HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA001214, mRNA sequence.
CN911109.1:364-386
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG364AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
010921AVBC072096PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC072096, mRNA sequence.
CN942528.1:333-355
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG333AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
020730AVBC009224HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC009224, mRNA sequence.
CN946397.1:341-363
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG341AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
020807AVBC013235HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013235, mRNA sequence.
CN948539.1:336-358
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG336AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mdfr3003m07.y1 Mdfr Malus domestica cDNA clone Mdfr3003m07 5' similar to TR:Q9ZRF5 Q9ZRF5 ACIDIC RIBOSOMAL PROTEIN P2A-4, mRNA sequence.
CN995783.2:111-133
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGT111AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mdfr3004j04.y1 Mdfr Malus domestica cDNA clone Mdfr3004j04 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO066569.2:331-353
CCCCTGCTGCAGCTGAAGCGAAGAAAGAGG331AGAAGGTCGAGGAGAAAGAGGAATCCAATGATGACATGCGATTCAGCCTCTAT
Mdfrt3029m02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3029m02 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO068245.1:329-351
CCCCTGCTGCANCTGAGGCGAAGAAAGAGG329AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGAATTCTTCTCTTT
Mdfr3007o11.y3 Mdfr Malus domestica cDNA clone Mdfr3007o11 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO415573.1:354-376
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG354AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mdfr3011d19.y2 Mdfr Malus domestica cDNA clone Mdfr3011d19 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO417034.1:339-361
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG339AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mddb5003i13.y1 Mddb Malus domestica cDNA clone Mddb5003i13 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO723487.1:330-352
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG330AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mdfrt3053d01.y1 Mdfrt Malus domestica cDNA clone Mdfrt3053d01 5' similar to SW:RA2A_MAIZE P46252 60S ACIDIC RIBOSOMAL PROTEIN P2A, mRNA sequence.
CO752233.1:44-66
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG44AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
Mddb5018n16.y1 Mddb Malus domestica cDNA clone Mddb5018n16 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CO901758.1:343-365
CCCCTGCTGCAGCTGAGGCGAAGAAAGAGG343AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGATTCAGTCTCTTT
TSA: Pyrus communis mRNA, contig: lc795.
FX609382.1:405-427
GCCCCTGCTGCAGCTGAGGCAAAGAAGAGG405AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
TSA: Pyrus communis mRNA, contig: lc1554.
FX610141.1:346-368
GCCCCTGCTGCAGCTGAGGCAAAGAAGAGG346AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTGTTT
TSA: Pyrus communis mRNA, contig: lc9272.
FX617857.1:307-329
CCCCTGCTGCAGCTGAGGCAAAGAAAGAGG307AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
TSA: Pyrus communis mRNA, contig: lc10731.
FX619315.1:322-344
CCCCTGCTGCAGCTGAGGCAAAGAAAGAGG322AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTGTTT
TSA: Pyrus communis mRNA, contig: lc22243.
FX630717.1:234-256
GCCCCTGCTGCAGCTGAGGCAAAGAAGAGG234AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTT
TSA: Pyrus communis mRNA, contig: lc94147.
FX657231.1:235-257
CTGGTGGAGTGGTGCTGTTGCAAAGNGAGG235AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTGTTT
TSA: Musa acuminata AAA Group Unigene93056_NK1 mRNA sequence.
JV425951.1:31-53
CCCCGGCGGCCGAGGAGCCGAAGAAGGAAG31AGAAGGTCGAGGAGAAAGAGGAATCCGACGACGATATGGGCTTCAGCTTGTTC
Musa troglodytarum cultivar karat chromosome 1.
CP097502.1:1023166-1023188
CCCCGGCGGCGGAAGAGCCGAAGAAGGAAG1023166AGAAGGTCGAGGAGAAAGAGGAATCCGACGACGTGAGCATTTTGATCCCGCTC
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:29502370-29502392
CCCCTGCTGCAGCTGAGGCAAAGAAAGAGG29502370AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGTAAGTTATCTGGATAATCTC
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:28611398-28611420
CCCCTGCTGCAGCTGAGGCAAAGAAAGAGG28611398AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGTAAGTTATCTGGATAATCTC
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:30336967-30336989
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG30336967AGAAGGTCGAGGAGAAAGAGGAATCTGATGATGTAAGTTATCTGGATAATCTC
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:28876185-28876207
CTCCTGCTGCAGCTGAGGCAAAGAAAGAGG28876185AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGTAAGTTATCTGGATAATCTC
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:31335871-31335893
CCCCTGCTGCAGCTGAGGCAAAGAAAGAGG31335871AGAAGGTCGAGGAGAAAGAGGAATCCGATGATGTAAGTTATCTGGATAATCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCCTCTTTCTCCTCGACCTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTCTTTCTCCTCGACCTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.018 | 1.009 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTCTTTCTCCTCGACCTTCT&k=0&no_gap=0&offset=0&limit=50
2.533 | 1.515 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGGTCGAGGAGAAAGAGGAA&k=0&no_gap=0&offset=0&limit=25
2.558 | 0.025 | cgi_end;

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