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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:42:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene52839_XinShao mRNA sequence.
JR642479.1:1270-1292
AATGTTGGGTGGAGTGTTTGTCATGCTCGT1270TTCCTGCCCAAGAGGTATCATAATTTCAGAAAATGTTGCACTATGATGATCGA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:27010043-27010065
ATTGTTAGGTGGAGTGTTTGTCATGCTGTT27010043TTCCTGCCCAAGAGGTATCATAATTGCAGAAAATGTTGCACTATGATGATCAA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH036_08138m, 5' end sequence.
AB450716.1:150-172
TATTTCATCATAGTGCAACATTTTCTGAAA150TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
020806AVBC012449HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012449, mRNA sequence.
CN948450.1:127-149
TCGATCATCATAGTGCAACATTTTCTGAAA127TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Pyrus pyrifolia mRNA, clone: NFR1_19_38, 5' end sequence, expressed in fruit.
HX747206.1:35-57
TATTTCATCATAGTGCAACATTTTCTGAAA35TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
TSA: Pyrus x bretschneideri Unigene72557_XinShao mRNA sequence.
JR658597.1:1-23
1TTATGATACCTCTTGGGCAGGAAAACAGCATGACAAACACTTCACCAAACAAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3126483-3126505
TCGATCATCATAGTGCAACATTTTCTGAAA3126483TTATGATACCTCTTGGGCAGGAAACGAGCATGACTAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3488001-3488023
TCGATCATCATAGTGCAACATTTTCTGAAA3488001TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3272171-3272193
TCGATCATCATAGTGCAACATTTTCTGAAA3272171TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:3792131-3792153
TCGATCATCATAGTGCAACATTTTCTGAAA3792131TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3514359-3514381
TCGATCATCATAGTGCAACATTTTCTGAAA3514359TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3313483-3313505
TCGATCATCATAGTGCAACATTTTCTGAAA3313483TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3533651-3533673
TCGATCATCATAGTGCAACATTTTCTGAAA3533651TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3536648-3536670
TCGATCATCATAGTGCAACATTTTCTGAAA3536648TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3501443-3501465
TCGATCATCATAGTGCAACATTTTCTGAAA3501443TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3538348-3538370
TCGATCATCATAGTGCAACATTTTCTGAAA3538348TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3905035-3905057
TCGATCATCATAGTGCAACATTTTCTGAAA3905035TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:2884845-2884867
TCGATCATTATAGTGCAACATTTTCTGAAA2884845TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCCTGCCCAAGAGGTATCATAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTGCCCAAGAGGTATCATAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTGCCCAAGAGGTATCATAA&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=TTATGATACCTCTTGGGCAGGAA&k=0&no_gap=0&offset=0&limit=48
0.325 | 0.010 | cgi_end;

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