GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-04 21:48:53, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

PU1_plate43_P09 PU1 Prunus persica cDNA similar to weakly similar to protein kinase CPK1 [Solanum tuberosum], mRNA sequence.
DY635259.1:32-51
ACCACCTTCCTCCCTCTATTTCTTCCCTTC32TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGCCTCCTCATTATCGC
PU3_plate41_F19 PU3 Prunus persica cDNA similar to weakly similar to protein kinase CPK1 [Solanum tuberosum], mRNA sequence.
DY644543.1:80-99
ACCACCTTCCTCCCTCTATTTCTTCCCTTC80TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGCCTCCTCATTATCGC
Pm_2352 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW870926.1:73-92
ACCACCTTCCTCCCTCTATTTCTTCCCTTC73TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCCCATTATCTC
Prunus dulcis DNA, pseudomolecule Pd07.
AP019303.1:14618575-14618594
ACCACCTTCCTCCCTCTATTTCTTCCCTTC14618575TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCTCATTATCGC
Prunus speciosa IZO01 DNA, chromosome 7, sequence.
AP029595.1:22668856-22668875
ACCACCTTCGTCCCTCTATTTCTTCCCTTC22668856TTCCTGCTATCTGCTCCAATCTTTCCTTCAATTTGTCTTCTCATTATCTT
Prunus speciosa IZO01 DNA, chromosome 7.
AP038361.1:22112672-22112691
ACCACCTTCGTCCCTCTATTTCTTCCCTTC22112672TTCCTGCTATCTGCTCCAATCTTTCCTTCAATTTGTCTTCTCATTATCTT
Prunus speciosa IZO01 DNA, chromosome 7.
AP038369.1:18080777-18080796
ACCACCTTCGTCCCTCTATTTCTTCCCTTC18080777TTCCTGCTATCTGCTCCAATCTTTCCTTCAATTTGTCTTCTCATTATCTT
Prunus mume strain koushuu saisyou clone P21 SSR marker genomic sequence.
GU458022.1:1-20
1TTCCTGCTATCTGCTCCAATATCGATCGATTGATCGAGGATCAGACTACG
Prunus mume strain gojrou clone P22 SSR marker genomic sequence.
GU458023.1:1-20
1TTCCTGCTATCTGCTCCAATATCGTTCGATTGATCGAGGATCAGACTACG
Prunus dulcis genome assembly, chromosome: 7.
OZ022203.1:19669459-19669478
ACCACCTTCCTCCCTCTATTTCTTCCCTTC19669459TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCTCATTATCGC
Prunus dulcis genome assembly, chromosome: 7.
OZ022212.1:19731905-19731924
ACCACCTTCCTCCCTCTATTTCTTCCCTTC19731905TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCTCATTATCGC
Prunus armeniaca genome assembly, chromosome: 7.
OZ046366.2:18634277-18634296
ACCACCTTCCTCGCTCTATTTCTTCCCTTC18634277TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCCCATTATTTC
Prunus armeniaca genome assembly, chromosome: 7.
OZ177843.1:19461955-19461974
ACCACCTTCCTCGCTCTATTTCTTCCCTTC19461955TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCCCATTATTTC
Prunus brigantina genome assembly, chromosome: 7.
OZ184548.1:20019573-20019592
ACCACCTTCCTCCCTCTATTTCTTCCCTTC20019573TTCCTGCTATCTGCTCCAATCTTTCCTCTAATTTGTCTCCTCATTATCGC
Rosa agrestis genome assembly, chromosome: 6.
OZ215659.1:35444488-35444507
GACCCAAACCTCTCTTTCTTTCTGCTCGTC35444488TTCCTGCTATCTGCTCCAATATGATTGATTTTGTCATGGGCGGTTGCTTA
Rosa agrestis genome assembly, chromosome: 22.
OZ215691.1:38237873-38237892
GATCCAAACCTCTCTTTCTTTCTGCTCGTC38237873TTCCTGCTATCTGCTCCAATATGATTGATTTTGTTGGGTCAATCATGGGC
Rosa agrestis genome assembly, chromosome: 22.
OZ215691.1:38492484-38492503
GATCCAAACCTCTCTTTCTTTCTGCTCGTC38492484TTCCTGCTATCTGCTCCAATATGATTGATTTTGTTGGGTCAATCATGGGC
Rosa agrestis genome assembly, chromosome: 6.
OZ215694.1:35671103-35671122
GACCCAAACCTCTCTTTCTTTCTGCTCGTC35671103TTCCTGCTATCTGCTCCAATATGATTGATTTTGTCATGGGCGGTTGCTTA
Rosa spinosissima genome assembly, chromosome: 4.
OZ218469.1:54918508-54918527
TTTTGACCCAAACCTCTCTTTCTTCTCGTC54918508TTCCTGCTATCTGCTCCAATCTTTCCTCATTATACATCTCATTTCTCTTC
Rosa spinosissima genome assembly, chromosome: 6.
OZ218471.1:36696284-36696303
GACCCAAACCTCTCTTTCTTTCTGCTCGTC36696284TTCCTGCTATCTGCTCCAATATGATTGATTTTGTCATGGGCGGTTGCTTA
Rosa canina genome assembly, chromosome: 19.
OZ221618.1:23030034-23030053
GCCCATGATTGACCCAACAAAATCAATCAT23030034ATTGGAGCAGATAGCAGGAAGACGAGCAGAAAGAAAGAGAGGTTTGGATC
Rosa canina genome assembly, chromosome: 19.
OZ221618.1:23287875-23287894
GCCCATGATTGACCCAACAAAATCAATCAT23287875ATTGGAGCAGATAGCAGGAAGACGAGCAGAAAGAAAGAGAGGTTTGGATC
Rosa canina genome assembly, chromosome: 25.
OZ221625.1:21629399-21629418
TAAGCAACCGCCCATGACAAAATCAATCAT21629399ATTGGAGCAGATAGCAGGAAGACGAGCAGAAAGAAAGAGAGGTTTGGGTC
Prunus ramburei genome assembly, chromosome: 6.
OZ234815.1:6207128-6207147
GAGATAATGGGGAGACAAATTAGAGGAAAG6207128ATTGGAGCAGATAGCAGGAAGAAGGGAAGAAATAGAGGGAGGAAGGTGGT
Flavobacterium sp. KBS0721 chromosome, complete genome.
CP042170.1:530557-530576
ATCCTTTTTTGCTGGGGTTCAGCACAAAAG530557ATTGGAGCAGATAGCAGGAAATAGCTCCTAAACAAAAACTAAATTCCAAA
Bactra furfurana genome assembly, chromosome: Z.
OZ297105.1:39234355-39234374
TTTTTTCATGGAGATGAATCTTCACCAGCG39234355ATTGGAGCAGATAGCAGGAAACCCTATTCACTCTATTGCCGATCCGACCA
Leucoraja naevus genome assembly, chromosome: 2.
OZ285714.1:103353071-103353090
CAATTAACATATGGCAGTGGCAGGGAAGTC103353071ATTGGAGCAGATAGCAGGAAAGGTTTTACTCCCATTTGATTTAAATGGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCTGCTATCTGCTCCAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTGCTATCTGCTCCAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.421 | 0.412 | search_plus_done; http://172.18.8.135:50900/match?q=TTCCTGCTATCTGCTCCAAT&k=0&no_gap=0&offset=0&limit=50
0.557 | 0.136 | search_minus_done; http://172.18.8.135:50900/match?q=ATTGGAGCAGATAGCAGGAA&k=0&no_gap=0&offset=0&limit=30
0.562 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).