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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 20:59:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR4AX14JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV573147.1:74-93
ATGGATTAATACATAAACGTTAAGATTCAA74TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RR4AZ26JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV573300.1:74-93
ATGGATTAATACATAAACGTTAAGATTCAA74TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RS2BO11JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX899095.1:66-85
ATGGATTAATACATAAACGTCAAGATTCAA66TTCGATTGCAAGGGAAGAAGAACGATGCAGTACAAAGAATCTGTACAATA
RR3DR63JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911101.1:57-76
ATGGATTAATACATAAACGTTGAGATTCAA57TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RR3DR67JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911105.1:35-54
TTTTTTTTTTACATAAACGTTGAGATTCAA35TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RR4DN03JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918933.1:79-98
ATGGATTAATACATAAACGTTAAGATTCAA79TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RS3E427JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY945182.1:90-109
ATGGATTAATACATAAACGTTAAGATCCAA90TTCGATTGCAAGGGAAGAAGGACAATGAAGTACAAAGAATCTGTACAATA
RR3EG11JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD544380.1:59-78
ATGGATTAATACATAAACGTTAAGATTCAA59TTCGATTGCAAGGGAAGAAGAACGATGCAGTACAAAGAATCTGTACAATA
RR3EJ63JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD544636.1:59-78
ATGGATTAATACATAGACGTTGAGATTCAA59TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RR1GP26JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD960374.1:98-117
ATGGATTAATACATAAACGTTGAGATTCAA98TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
RR1GR38JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD960504.1:65-84
ATGGATTAATACATAAACGTTGAGATTCAA65TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
Raphanus sativus mRNA, clone: RSCS06G20, 5' end sequence.
FY448059.1:75-94
ATGGATTAATACATAAACGTTAAGATTCAA75TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2926.
FX662560.1:33-52
ATGGATTAATACATAAACGTTAAGATTCAA33TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:30606602-30606621
ATGGATTAATACATAAACGTTAAGATTCAA30606602TTCGATTGCAAGGGAAGAAGGACGATGCAGTACAAAGAATCTGTACAATA
Crossocerus cetratus genome assembly, chromosome: 9.
OY776670.1:8420590-8420609
CTTATCTGAGCGCGCCGGTGTTTCGCCAGT8420590TTCGATTGCAAGGGAAGAAGAGATGCGGTGTAAGTCGAAACTCCTTGCGA
RS3GK45TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD956397.1:414-433
TATTGTACAGATTCTTTGTACTGCATCGTT414CTTCTTCCCTTGCAATCGAATTGAATCTTGACGTTTATGTATTAATCCAT
TSA: Raphanus sativus RS26161 mRNA sequence.
JT810708.1:870-889
TATTGTACAGATTCTTTGTACTGCATCGTC870CTTCTTCCCTTGCAATCGAATTGAATCTTAACGTTTATGTATTAATC
Sporisorium scitamineum strain SSC39 chromosome 7, complete sequence.
CP010919.1:296567-296586
GAATGTTCAGATCGTATCATGTCGGGTCAG296567CTTCTTCCCTTGCAATCGAAAGTCGGAGGGAAAGGAGCAGAAAAAGGACT
Sporisorium scitamineum strain SscI8 genome assembly, scaffold: SPSC_scaffold_46.
LK056694.1:292219-292238
GAATGTTCAGATCGTATCATGTCGGGTCAG292219CTTCTTCCCTTGCAATCGAAAGTCGGAGGGAAAGGAGCAGAAAAAGGACT
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:2372780-2372799
TATTGTACAGATTCTTTGTACTGCATCGTC2372780CTTCTTCCCTTGCAATCGAATTGAATCTTAACGTTTATGTATTAATCCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCGATTGCAAGGGAAGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGATTGCAAGGGAAGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.385 | 1.377 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGATTGCAAGGGAAGAAG&k=0&no_gap=0&offset=0&limit=50
1.610 | 0.225 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTCCCTTGCAATCGAA&k=0&no_gap=0&offset=0&limit=35
1.614 | 0.003 | cgi_end;

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