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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-12 11:59:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3702 from patent US 10766935.
MV647097.1:31-49
CGCCACTCAACCTCACGCGCCCCTCTCATT31TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Sequence 3708 from patent US 10766935.
MV647103.1:7-25
CTCATT7TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Sequence 3723 from patent US 10766935.
MV647118.1:5-23
TCAT5TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAAAGAGACAAGGCGA
Sequence 3729 from patent US 10766935.
MV647124.1:51-69
CCGGAATTCCGGGTCGACCACGCGTCCGTT51TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
Sequence 3702 from patent US 11566053.
OS270576.1:31-49
CGCCACTCAACCTCACGCGCCCCTCTCATT31TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Sequence 3708 from patent US 11566053.
OS270582.1:7-25
CTCATT7TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Sequence 3723 from patent US 11566053.
OS270597.1:5-23
TCAT5TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAAAGAGACAAGGCGA
Sequence 3729 from patent US 11566053.
OS270603.1:51-69
CCGGAATTCCGGGTCGACCACGCGTCCGTT51TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
39RDBRT_UP_046_A02_22JUL2004_016 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272831.1:5-23
GATT5TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
20ACACDS_UP_008_A11_09MAR2004_095 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX278565.1:8-26
GCTCATT8TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
57ACPE6_UP_006_D06_13SEP2004_042 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE414924.1:13-31
GCCTCGCTCATT13TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
32ETGS24_UP_017_G12_09FEB2005_084 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426958.1:4-22
ATT4TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
24RDBNH_UP_064_D03_01NOV2005_025 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE509101.1:14-32
GGCCCCTCTCATT14TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
24RDBNH_T3_118_C10_22SEP2006_076 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES917269.1:9-27
GGCTCATT9TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
DHBN6DCT_UP_028_C03_18FEB2005_027 Brassica napus DHBN6DCT Brassica napus cDNA 5', mRNA sequence.
EV012579.1:16-34
GGCGCCCCTCTCATT16TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
0091985 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV194499.1:51-69
CCGGAATTCCGGGTCGACCACGCGTCCGTT51TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
RS3E885TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY950142.1:6-24
GGATT6TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAAAGAGACAAGGCGA
RS2FO39TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD571254.1:7-25
GGTCAT7TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAAAGAGACAAGGCGA
RS1GL19TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940069.1:5-23
GGAT5TTCGATTGCCTCTCACTCTGCCTAGAGAGAGAGAGAAAGAGACAAGGCG
RR3G212TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD978547.1:6-24
GGATT6TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAGAGAGAGAGAGAGA
RR3GV87TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD981061.1:6-24
GGATT6TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAGAGAAGAAGAGGCA
BN18DYSC_UP_108_A09_31MAR2008_079 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG561928.1:14-32
GGCCCCTCTCATT14TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_23815.
FX767733.1:21-39
GCTTCACGCGCCCCTCTCAT21TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAGAGAGACAGGAATC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 92 unordered pieces.
FJ789644.1:632723-632741
CGCCACTCAACCTCACGCGCCCCTCTCATT632723TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 71 unordered pieces.
FJ789647.1:597527-597545
CGCCACTCAACCTCACGCGCCCCTCTCATT597527TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
AC189221.2:96376-96394
CGCCACTCAACCTCACGCGCCCCTCTCATT96376TTCGATTGCCTCTCACTCTGCGAGAGAGAGCGAAAAGGCGAAGACGACG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:10679989-10680007
GCCACTCACATCACGCGCCCCTCGCTCATT10679989TTCGATTGCCTCTCACTCTGCGAGAGAGAGAGCCAAAAGGCGAAGAAGA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:12806430-12806448
CTCGCCACTCGCCTCACGCGCCCCTCTCAT12806430TTCGATTGCCTCTCACTCTGCCAGAGAGAGAGAGAGAAAGAGACAAGGC
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 4B.
OX082600.1:201920723-201920741
TTGGCTGGTGCGATGAACTGCTTGGGTGAG201920723TTCGATTGCCTCTCACTCTCTCTCTCTCTCTCTAGTCTACCCGAAATCT
Lactuca saligna genome assembly, chromosome: 4.
OX465080.1:131016943-131016961
TAATGACTTTGAATTATTTATCATGTCATT131016943TTCGATTGCCTCTCACTCTAGCTGTTCATTAAAGATGTTAACCCTTCAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX590742.1:300090441-300090459
ACGAAGCGTAAAACCCTACTACTGCTTTTA300090441TTCGATTGCCTCTCACTCTATTGTTGTCATTCGTTGTTGTTTTTATTGT
Erannis defoliaria genome assembly, chromosome: 14.
FR990080.1:4066231-4066249
ATTACTTGTTCTGTTCCAATGAACTTAGTA4066231TTCGATTGCCTCTCACTCTAACACATTTATTTGTTATATCGCCATTTCT
Anopheles nili genome assembly, chromosome: 3.
OX031311.1:43288288-43288306
CATGCGTTACTTTTCCACGAACATGCGCCT43288288TTCGATTGCCTCTCACTCTACCGGTACGGGCTGATAGTGGAAGGCGATT
RR1BY37TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX747257.1:290-308
CCTGTCTCTCTCTCTCTCTCTCTCTCTGGC290AGAGTGAGAGGCAATCGAAATGAGAGGGGCGCGTGAGGCGAGTGGCGAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13785.
FX659756.1:1284-1302
GCCTTGTCTCTTTCTCTCTCTCTCTCTGGC1284AGAGTGAGAGGCAATCGAAATGAGAGGGGCGCGTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4148.
FX703020.1:1182-1200
CGTCGTCTTCGCCTTTTCGCTCTCTCTCGC1182AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTTGAGTGGCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_16121.
FX763501.1:466-484
CGGCGTCTTCGCCTTTTCGCTCTCTCTCGC466AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTTGAGTGGCG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:60946951-60946969
CGGCGTCTTCGCCTTTTCGCTCTCTCTCGC60946951AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTTGAGTGGCG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:44767223-44767241
CGTCGTCTTCGCCTTTTCGCTCTCTCTCGC44767223AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTTGAGTGGCG
Brassica rapa genome, scaffold: A09.
LR031568.1:49076599-49076617
CGTCGTCTTCGCCTTTTCGCTCTCTCTCGC49076599AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTGAGTGGGCG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:40370776-40370794
CTTTTGGCTCTCTCTCTCTCTCTCTCTCGC40370776AGAGTGAGAGGCAATCGAAAATGAGCGAGGGGCGCGTGATGTGAGTGGC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:59548675-59548693
CGTCGTCTTCGCCTTTTCGCTCTCTCTCGC59548675AGAGTGAGAGGCAATCGAAAATGAGAGGGGCGCGTGAGGTGAGTGGGCG
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:31226521-31226539
GCCTTGTCTCTTTCTCTCTCTCTCTCTGGC31226521AGAGTGAGAGGCAATCGAAATGAGAGGGGCGCGTGAGGCGAGTGGCGAG
Stomoxys calcitrans genome assembly, chromosome: 5.
OY720439.1:105868956-105868974
TTACGGACCATAGCATTGTGGGATTCAGAA105868956AGAGTGAGAGGCAATCGAACATAGGTTAAGGCGTGGGGCAACTGCAAAG
Maratus michaelseni genome assembly, chromosome: 2.
OZ007588.1:231519882-231519900
AATAGATGTCTTGAGATGACTTGAAGTCCA231519882AGAGTGAGAGGCAATCGAAGATTCGAAAAATTCTTGATTTGATGTAACC
Maratus michaelseni genome assembly, chromosome: 8.
OZ007594.1:81960370-81960388
GGAGAAATTGAAAATGTAACTTATAATCCA81960370AGAGTGAGAGGCAATCGAAGACTTTGGAAATTCTTCATTCTATATATAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCGATTGCCTCTCACTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGATTGCCTCTCACTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.778 | 1.768 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGATTGCCTCTCACTCT&k=0&no_gap=0&offset=0&limit=50
2.008 | 0.231 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGTGAGAGGCAATCGAA&k=0&no_gap=0&offset=0&limit=17
2.017 | 0.008 | cgi_end;

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