GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-15 12:10:25, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH025C18, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.
AC237965.1:119163-119186
ATGGCATAAGCTTATGGGAAAGAATGTGCT119163TTCTATTACTCATGAAGGCTCTCCTTACATCCGCACTTACGCACATTGCTCAAA
Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0193P17, complete sequence.
AC232704.1:43408-43431
ATGGCATAAGCTTATGGGAAAGAATGTGCT43408TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
Solanum tuberosum DNA for genomic PstI fragment from 5'end, clone GP186.
AJ492239.1:40-63
ATGGCATAAGCTTATGGGAAAGAATGTGCT40TTCTATTACTCATGAAGGCTCTCCTTACATCCGCACTTACGCACATTGCTCAAA
Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:6123797-6123820
ATGGCATAAGCTTATGGGAAAGAATGTGCT6123797TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:5785024-5785047
ATGGCATAAGCTTATGGGAAAGAATGTGCT5785024TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:6332033-6332056
ATGGCATAAGCTTATGGGAAAGAATGTGCT6332033TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:5784973-5784996
ATGGCATAAGCTTATGGGAAAGAATGTGCT5784973TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:7009418-7009441
ATGGCATAAGCTTATGGGAAAGAATGTGCT7009418TTCTATTACTCATGAAGGCTCTCCCTACATCCGCACTTACGCACATTGCTCAAA
LuSp212E12_1061063953220_TV POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp212E12, genomic survey sequence.
GS521128.1:546-569
TTTGAGCAATGTGCGTAAGTGCGGATGTAA546GGAGAGCCTTCATGAGTAATAGAAAGCACATTCTTTCCCATAAGCTTATGCCAT
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH201A02, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.
AC238408.1:100024-100047
TTTGAGCAATGTGCGTAAGTGCGGATGTAA100024GGAGAGCCTTCATGAGTAATAGAAAGCACATTCTTTCCCATAAGCTTATGCCAT
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:473317-473340
TTTGAGCAATGTGCGTAAGTCCGGATGTAA473317GGAGAGCCTTCATGAGTAATAGAAAGCACATTCTTTCCCATAAGCTTATGCCAT
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:368757-368780
TTTGAGCAATGTGCGTAAGTGCGGATGTAA368757GGAGAGCCTTCATGAGTAATAGAAAGCACATTCTTTCCCATAAGCTTATGCCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTATTACTCATGAAGGCTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTATTACTCATGAAGGCTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.426 | 0.417 | search_plus_done; http://172.18.8.135:50800/match?q=TTCTATTACTCATGAAGGCTCTCC&k=0&no_gap=0&offset=0&limit=50
0.720 | 0.294 | search_minus_done; http://172.18.8.135:50800/match?q=GGAGAGCCTTCATGAGTAATAGAA&k=0&no_gap=0&offset=0&limit=42
0.723 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).