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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:48:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Musa acuminata subsp. malaccensis isolate AA chromosome 3.
CP126372.1:40338795-40338814
ATACTCCATCAAATTCCCTTGGAAAAGTGT40338795TTCTCAACATTCACCAGCCAAGCAGCAGCAGCTTCAATAGAGCCATTCGA
Musa acuminata subsp. malaccensis isolate AA chromosome 14.
CP126383.1:40073148-40073167
ATACTCCATCAAATTCCCTTGGAAAAGTGT40073148TTCTCAACATTCACCAGCCAAGCAGCAGCAGCTTCAATAGAGCCATTCGA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A03.
HG996468.1:37499415-37499434
ATACTCCATCAAATTCCCTTGGAAAAGTGT37499415TTCTCAACATTCACCAGCCAAGCAGCAGCAGCTTCAATAGAGCCATTCGA
Musa balbisiana clone BAC MBP-36B13, complete sequence.
FN396603.1:1501-1520
TCGAATGGCTCTATTGAAGCTGCTGCTGCT1501TGGCTGGTGAATGTTGAGAAACACTTTCCCAAGGGAATTTGATCGAGTAT
Musa balbisiana clone BAC MBP-26I6, complete sequence.
FN396604.1:9985-10004
TCGAATGGCTCTATTGAAGCTGCTGCTGCT9985TGGCTGGTGAATGTTGAGAAACACTTTCCCAAGGGAATTTGATGGAGTAT
Musa balbisiana BAC contig MBP-32N20c, complete sequence.
FN396606.1:9985-10004
TCGAATGGCTCTATTGAAGCTGCTGCTGCT9985TGGCTGGTGAATGTTGAGAAACACTTTCCCAAGGGAATTTGATGGAGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTCAACATTCACCAGCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTCAACATTCACCAGCCA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.159 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCAACATTCACCAGCCA&k=0&no_gap=0&offset=0&limit=50
0.245 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTGGTGAATGTTGAGAA&k=0&no_gap=0&offset=0&limit=47
0.248 | 0.002 | cgi_end;

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