GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 00:37:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Paeonia suffruticosa contig02596.Pasudosp mRNA sequence.
JI445131.1:1044-1063
TTTACATATTCTGCCGAAATAAAAAGTATA1044TTCTCAGGCTTCAAGTCGGTATGTATGAGGTGCAAATCATGCATAAATGC
TSA: Paeonia suffruticosa contig10499.Pasudosp mRNA sequence.
JI445132.1:1044-1063
TTTACATATTCTGCCGAAATAAAAAGTATA1044TTCTCAGGCTTCAAGTCGGTATGTATGAGGTGCAAATCATGCATAAATGC
TSA: Paeonia suffruticosa contig17664.Pasudosp mRNA sequence.
JI445134.1:1044-1063
TTTACATATTCTGCCGAAATAAAAAGTATA1044TTCTCAGGCTTCAAGTCGGTATGTATGAGGTGCAAATCATGCATAAATGC
TSA: Capsicum annuum MGMT_Contig3672, mRNA sequence.
JW053916.1:1091-1110
TTAACATATTCAGAGGAGGTGAGAAGTATG1091TTCTCAGGCTTCAAGTCGGTATGGATAAGACGCAAATCATGCATAACTAC
TSA: Capsicum annuum CM_MegaContig_22381 mRNA sequence.
JW103205.1:709-728
TTAACATATTCAGAGGAGGTGAGAAATATG709TTCTCAGGCTTCAAGTCGGTATGGATAAGACGCAAATCATGCATAACGAT
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:42873562-42873581
TTAACATATTCAGGGGAGGTGAGAAATATG42873562TTCTCAGGCTTCAAGTCGGTATGGATAAGACGCAAATCATGCATAACTAC
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:181178618-181178637
TTAACATATTCAGGAAAGGTGAGAAGTATG181178618TTCTCAGGCTTCAAGTCGGTATAGATAAGATGCAAATCATGCATAACTAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:42725970-42725989
TTAACATATTCAGGGGAGGTGAGAAATATG42725970TTCTCAGGCTTCAAGTCGGTATGGATAAGACGCAAATCATGCATAACTAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:22285695-22285714
TTAACATATTCAGAGGAGGTGAGAAGTATG22285695TTCTCAGGCTTCAAGTCGGTATGGATAAGACGCAAATCATGCATAACTAC
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:43611784-43611803
TTAACATACTCAGGAGAAACAAAAAGTATG43611784TTCTCAGGCTTCAAGTCGGTGTGAATAAGGCGCATATCATGCATGACTAC
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:45883833-45883852
TTTACATACTCTGGAGAAACAAAAAGTATG45883833TTCTCAGGCTTCAAGTCGGTGTGAATAAGGCGCATATCATGCATGACTGC
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:45922736-45922755
TTTACATACTCTGGAGAAACAAAAAGTATG45922736TTCTCAGGCTTCAAGTCGGTGTGAATAAGACGCATATCATGCATGACTGC
Arctium minus genome assembly, chromosome: 14.
OX941093.1:69272464-69272483
TTGACGTATTCGGGAGACACTAGAAGGATA69272464TTCTCAGGCTTCAAGTCGGTATGTATTAAGCGCAGATCATGCATAACTGC
Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:3569337-3569356
TTCAAGTATTCCGGAGAAACAAAAAGTATA3569337TTCTCAGGCTTCAAGTCGGTATGGATGAGGCGCAAATCATGCATGACTGC
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:7183848-7183867
TTAATGTATTCTGAAGAAACAAAAAGTATG7183848TTCTCAGGCTTCAAGTCGGTATGGATGAGACGCATATCATGCATGACTGC
Quercus cerris genome assembly, chromosome: 9.
OY770014.1:42743619-42743638
TTTACATACTCTGGAGAAACAAAAAGTATG42743619TTCTCAGGCTTCAAGTCGGTGTGAATAAGGCTTATATATCATGCATGACT
Caenorhabditis briggsae isolate QX1410_ONT chromosome X.
CP090896.1:20665104-20665123
GTAGTGTAGTCACCAGATACGAACAGGATG20665104TTCTCAGGCTTCAAGTCGGTGTGGGTGAGCTTGTTCTCGTGCAAAAACTT
Caenorhabditis briggsae isolate VX34 chromosome X.
CP092625.1:20877327-20877346
GTAGTGTAGTCACCAGATACGAACAGGATG20877327TTCTCAGGCTTCAAGTCGGTGTGGGTGAGCTTGTTCTCGTGCAAAAACTT
Caenorhabditis briggsae strain AF16 chromosome X.
CP120835.1:20551142-20551161
GTAGTGTAGTCACCAGATACGAACAGGATG20551142TTCTCAGGCTTCAAGTCGGTGTGGGTGAGCTTGTTCTCGTGCAAAAACTT
Sequence 7432 from patent US 10006042.
MI852159.1:718-737
GCATTCATGCATGATATGTGCTTAATACAC718ACCGACTTGAAGCCTGAGAACATTCTTCTAGTGTCCCCAGAATATATCAA
Sequence 7432 from patent US 10337023.
MO175326.1:718-737
GCATTCATGCATGATATGTGCTTAATACAC718ACCGACTTGAAGCCTGAGAACATTCTTCTAGTGTCCCCAGAATATATCAA
Sequence 7432 from patent US 10774340.
MV709073.1:718-737
GCATTCATGCATGATATGTGCTTAATACAC718ACCGACTTGAAGCCTGAGAACATTCTTCTAGTGTCCCCAGAATATATCAA
Sequence 7432 from patent US 11499161.
OO876854.1:718-737
GCATTCATGCATGATATGTGCTTAATACAC718ACCGACTTGAAGCCTGAGAACATTCTTCTAGTGTCCCCAGAATATATCAA
KS12019B12 KS12 Capsicum annuum cDNA, mRNA sequence.
CA523162.1:274-293
GTAGTTATGCATGATTTGCGTCTTATCCAT274ACCGACTTGAAGCCTGAGAACATATTTCTCACCTCCCCTGAATATGTCAC
CG-N01_002_D01 Casuarina glauca Nodules Casuarina glauca cDNA, mRNA sequence.
CO038437.1:58-77
GCATTTATGCATGACTTGCGACTTATACAT58ACCGACTTGAAGCCTGAGAATATACTTCTAGTTTCTTCAGATTACGTTAA
UCRCS09_33D02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-33D02-G4-1-4.g, mRNA sequence.
CX050584.1:754-773
GCATTCATGCATGATTTGCGCCTCATCCAT754ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
C06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
CX297861.1:478-497
GCATTCATGCATGATTTGCGCCTCATCCAT478ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CCIM12102.b1_K02.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIM12102, mRNA sequence.
EH687345.1:468-487
GCAGTTATGCATGATTTGGGCTTAATACAC468ACCGACTTGAAGCCTGAGAACATCCTTCTAGTATCACCTGAATATATCAA
CCIM7969.b1_B02.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIM7969, mRNA sequence.
EH696158.1:665-684
GCATTTATGCATGATTTGGGCTTAATACAC665ACCGACTTGAAGCCTGAGAACATCCTTCTAGTATCACCTGAATATATCAA
CCIM8728.b1_O22.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIM8728, mRNA sequence.
EH696912.1:408-427
ATCGTTATGCATGATTTGGGCTTAATACAC408ACCGACTTGAAGCCTGAGAACATCCTTCTAGTATCACCTGAATATATCAA
CCIS9739.b1_F11.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIS9739, mRNA sequence.
EH710433.1:44-63
AGCATTTATCATGATTTGGGCTTAATACAC44ACCGACTTGAAGCCTGAGAACATCCTTCTAGTATCACCTGAATATATCAA
CNMM6332.b1_H23.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM6332, mRNA sequence.
EH733519.1:193-212
ATCGTTATGCATGATCTCCGCTTAATACAC193ACCGACTTGAAGCCTGAGAATATTCTTCTAGTGTCTCCCGAATACGTCAA
CNSM11385.b1_A16.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM11385, mRNA sequence.
EH765357.1:298-317
GCATTTATGCATGATCTCCGCTTAATACAC298ACCGACTTGAAGCCTGAGAATATTCTTCTAGTGTCTCCCGAATATGTCAA
CCEM6468.b1_H10.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM6468, mRNA sequence.
EL361879.1:286-305
TATCTTATGCATGATTCGGGCTTAATACAC286ACCGACTTGAAGCCTGAGAACATTCTTTTAGTATCACCTGAATATGTCAA
CFFM14055.b1_M10.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM14055, mRNA sequence.
EL376740.1:586-605
GCATTTATGCATGATTTGCGCTTAATACAC586ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFM18516.b1_G21.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM18516, mRNA sequence.
EL381050.1:544-563
ATCGTTATGCATGATCTCCGCTTAATACAC544ACCGACTTGAAGCCTGAGAATATTCTTCTAGTGTCTCCCGAATACGTCAA
CFFM19677.b1_I23.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM19677, mRNA sequence.
EL382309.1:25-44
GCGGGGCATATTTCGCTTAATACC25ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFM21963.b1_E19.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM21963, mRNA sequence.
EL384783.1:723-742
GCATTTATGCATGATCTCCGCTTAATACAC723ACCGACTTGAAGCCTGAGAATATTCTTCTAGTGTCTCCCGAATACGTCAA
CFFM22242.b1_D18.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM22242, mRNA sequence.
EL385081.1:727-746
GCATTTATGCATGATCTCCGCTTAATACAC727ACCGACTTGAAGCCTGAGAATATTCTTCTAGTGTCTCCCGAATACGTCAA
CFFM23861.b1_I13.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM23861, mRNA sequence.
EL386459.1:529-548
GTCGTTATGCATGATTTGCGCTTAATACAC529ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFM3305.b1_A12.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM3305, mRNA sequence.
EL391747.1:677-696
GCATTTATGCATGATTTGCGCTTAATACAC677ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTAT
CFFS10851.b1_F01.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS10851, mRNA sequence.
EL399523.1:179-198
GCATTTATGCATGATTTGCGCTTAATACAC179ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFS2591.b1_M24.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS2591, mRNA sequence.
EL404657.1:524-543
GCATTTATGCATGATTTGCGCTTAATACAC524ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFS8594.b1_D13.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS8594, mRNA sequence.
EL410986.1:250-269
GCATTTATGCATGATTTGCGCTTAATACAC250ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CFFS8702.b1_K16.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS8702, mRNA sequence.
EL411094.1:252-271
GCATTTATGCATGATTTGCGCTTAATACAC252ACCGACTTGAAGCCTGAGAACATTCTTCTAGCATCTTCGGATTATATCAA
CHTM10045.b1_I15.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM10045, mRNA sequence.
EL435407.1:537-556
GCAGTCATGCATGATCTGCGCTTGATACAC537ACCGACTTGAAGCCTGAGAACATTCTTCTAGTGTCCTCAGAATATATCAA
CS00-C1-401-053-C12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY678954.1:335-354
GCAGTCATGCATGATTTGCGCCTCATCCAT335ACCGACTTGAAGCCTGAGAAATATACTTTTTTGTTTCCCCGGAATACTTG
CS00-C1-401-059-B01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY679338.1:343-362
GCAGTCATGCATGATTTGCGCCTCATCCAT343ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CS00-C3-703-076-F03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY724488.1:370-389
GCATTCATGCATGATTTGCGCCTCATCCAT370ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CR05-C1-102-022-E09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY767975.1:400-419
GCATTCATGCATGATTTGCGCCTCATCCAT400ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CR05-C3-701-041-G04-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY796576.1:328-347
GCATTCATGCATGATTTGCGCCTCATCCAT328ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
PT11-C1-900-048-A09-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY814562.1:241-260
TGCAGTCATGCATGATTGCGCCTCATCCAT241ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CA26-C1-002-025-E02-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY845630.1:251-270
GCAGTCATGCATGATTTGCGCCTCATCCAT251ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
CL06-C4-500-036-E08-CT.F Rangpur lime root, greenhouse plant Citrus limonia cDNA, mRNA sequence.
EY869215.1:506-525
GCAGTCATGCATGATTTGCGCCTCATCCAT506ACCGACTTGAAGCCTGAGAATATACTTTTTGTTTCTCCGGAATACTTGAA
TSA: Capsicum annuum MGMT_Contig43980 mRNA sequence.
JW094224.1:345-364
ATCGTTATGCATGATTTGCGTCTTATCCAT345ACCGACTTGAAGCCTGAGAACATATTTCTCACCTCCCCTGAATATGTTAA
TSA: Capsicum annuum MA_MegaContig_15574, mRNA sequence.
JW157995.1:27-46
TTATGCATGATTTGCGTCTTATCCAT27ACCGACTTGAAGCCTGAGAACATACTTCTCACCTCCTCTGAATATGTTAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:269599415-269599434
GTAGTTATGCATGATTTGCGTCTTATCCAT269599415ACCGACTTGAAGCCTGAGAACATACTTCTCACCTCCTCTGAATATGTTAA
Papaver somniferum cultivar Roxanne chromosome 11.
CP048212.1:139247521-139247540
ACAGTTATGCATGATTTGCATCTTGTCCAT139247521ACCGACTTGAAGCCTGAGAACATACTTCTTGTGTCGCCAGAGTATGTAAA
Papaver somniferum cultivar Roxanne chromosome 5.
CP048217.1:69820330-69820349
ACAGTTATGCATGATTTGCATCTTGTCCAT69820330ACCGACTTGAAGCCTGAGAACATACTTCTTGTGTCGCCAGAGTATGTAAA
Quercus dentata isolate Qdleaves-2020 chromosome 3.
CP116446.1:56723201-56723220
GCAGTCATGCATGATATGCGCCTTATTCAC56723201ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:72038156-72038175
GTAGTTATGCATGATTTGCATCTTATCTAT72038156ACCGACTTGAAGCCTGAGAACATACTTCTCACCTTTCCTGAATATGTTAA
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:42700948-42700967
GCAGTCATGCACGATATGCGCCTTATTCAC42700948ACCGACTTGAAGCCTGAGAACACACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:54971475-54971494
TGGCAGTCATGCATGATATGCCTTATTCAC54971475ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:55234456-55234475
GCAGTCATGCATGATATGCGCCTTATTCAC55234456ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 9b.
CP129441.1:11085889-11085908
AGTCATGCATGATATATAAGCCTTATTCAC11085889ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 9b.
CP129441.1:11104515-11104534
AGTCATGCATGATATATAAGCCTTATTCAC11104515ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:44725849-44725868
GCAGTCATGCACGATATGCGCCTTATTCAC44725849ACCGACTTGAAGCCTGAGAACACACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:57660039-57660058
TGGCAGTCATGCATGATATGCCTTATTCAC57660039ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:57870145-57870164
GCAGTCATGCATGATATGCGCCTTATTCAC57870145ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 9a.
CP129453.1:12080903-12080922
AGTCATGCATGATATATAAGCCTTATTCAC12080903ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus variabilis isolate HB chromosome 9a.
CP129453.1:12099472-12099491
AGTCATGCATGATATATAAGCCTTATTCAC12099472ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Ziziphus jujuba cultivar Dongzao chromosome 2.
CP134452.1:10379575-10379594
TCAGTTATGCATGATTTACGTCTGATTCAT10379575ACCGACTTGAAGCCTGAGAACATTCTTCTTGTTTCGTCGGATTATGTTAA
Fagus sylvatica genome assembly, chromosome: 12.
OU015772.1:22421822-22421841
GCAGTCATGCATGATATGCGCCTCATCCAT22421822ACCGACTTGAAGCCTGAGAACGTACTTTTTGTTTCTTCAGAGTATGTAAA
Quercus robur genome assembly, chromosome: 3.
OW028767.1:53354246-53354265
GCAGTCATGCATGATATGCGCCTTATTCAC53354246ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Vicia faba genome assembly, chromosome: 2.
OX451737.1:667201629-667201648
GCAGTTGTACATGATATGCGCCTCATCCAC667201629ACCGACTTGAAGCCTGAGAATATACTTTTTATTTCCCCAGAATATGTAAA
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:39301759-39301778
GCAGTCATGCACGATATGCGCCTTATTCAC39301759ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:51162451-51162470
TGGCAGTCATGCATTATATGCCTTATTGAC51162451ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCCCCAGAGTATGTAAA
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:51345780-51345799
GCAGTCATGCATGATATGCGCCCTATTCAC51345780ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGCATGTAAA
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:51525045-51525064
GCAGTCATGCATGATATGCGCCTTATTCAC51525045ACCGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAGTATGTAAA
Branchellion lobata genome assembly, chromosome: 2.
OX387247.1:12780771-12780790
CCAGTCCTCCATGACAACCGACTCACTCAC12780771ACCGACTTGAAGCCTGAGAACATCTTATTCGTCGACTCAACATCTGAAGT

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