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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:19:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

A BAC library has been constructed from PN40024 genotype using the restriction enzyme HindIII (clone prefix : VV40024H).
CU779516.1:303-322
ACCCTGCCATTCTCACCATCCTCAGATAAC303TTCTCAGTTTTTGGGGTGCTCAGGTATATACCCATCTCTAGCTGCGCGAT
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:84819536-84819555
AGCTTGTCATTTTCACCATCTTCTGATAAC84819536TTCTCAGTTTTTGGGGTGCTGAGATATACCCCCATTTCCTGAATAAACCA
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:138320887-138320906
AGCTTGTCATTTTCACCATCTTCTGATAAC138320887TTCTCAGTTTTTGGGGTGCTGAGATATACCCCCATTTCCTGAATAAACCA
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:186618676-186618695
AGCTTGTCATTTTCACCATCTTCTGATAAC186618676TTCTCAGTTTTTGGGGTGCTGAGATATACCCCCATTTCCTGAATAAACCA
Theobroma grandiflorum isolate C1074 chromosome 9.
CP142129.1:46454126-46454145
ACCCTGTCATTCTCGCCATCTTCTGAGAAT46454126TTCTCAGTTTTTGGGGTGCTGAGATATATACCCATCTATGTCTGCAATTG
Vitis vinifera cv. PN40024, annotated scaffold_110.assembly12x.
FN596010.1:172479-172498
ACCCTGCCATTCTCACCATCCTCAGATAAC172479TTCTCAGTTTTTGGGGTGCTCAGGTATATACCCATCTCTAGCTGCGCGAT
Theobroma cacao genome assembly, chromosome: 9.
OY284446.1:40803738-40803757
ACCCTGTCATTCTCGCCATCTTCTGAGGAT40803738TTCTCAGTTTTTGGGGTGCTGAGATATATACCCATCTATGTCTGCAATTG
Theobroma cacao genome assembly, chromosome: 9.
OY284456.1:40705759-40705778
ACCCTGTCATTCTCGCCATCTTCTGAGGAT40705759TTCTCAGTTTTTGGGGTGCTGAGATATATACCCATCTATGTCTGCAATTG
Theobroma cacao genome assembly, chromosome: 9.
OY284466.1:41069354-41069373
ACCCTGTCATTCTCGCCATCTTCTGAGGAT41069354TTCTCAGTTTTTGGGGTGCTGAGATATATACCCATCTATGTCTGCAATTG
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737400.1:543255350-543255369
GAGGCAGTGAAGGACATGGCAGATGGGCTT543255350TTCTCAGTTTTTGGGGTGCTGAACCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737402.1:109000455-109000474
GAGGCAGTGAAGGACATGGCAGCTCGGCTC109000455TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737470.1:100170387-100170406
GAGGCAGTGAAGGACATGGCAGCTCGGCTC100170387TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737477.1:101610876-101610895
GAGGCAGTGAAGGACATGGCAGCTCGGCTC101610876TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737484.1:101762469-101762488
GAGGCAGTGAAGGACATGGCAGCTCGGCTC101762469TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737499.1:104541054-104541073
GAGGCAGTGAAGGACATGACAGCTCGGCTC104541054TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737506.1:97557406-97557425
GAGGCAGTGAAGGACATGACAGCTCGGCTC97557406TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737513.1:100997881-100997900
GAGGCAGTGAAGGACATGGCAGCTCGGCTC100997881TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737614.1:105901048-105901067
GAGGCAGTGAAGGACATGGCAGCTCGGCTC105901048TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737620.1:331249492-331249511
GAGGCAGTGAAGGACATGGCAGATGGGCTC331249492TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737664.1:103216185-103216204
GAGGCAGTGAAGGACATGACAGCTCGGCTC103216185TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737869.1:101839947-101839966
GAGGCAGTGAAGGACATGGCAGCTCGGCTC101839947TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737876.1:98499774-98499793
GAGGCAGTGAAGGACATGGCAGCTCGGCTC98499774TTCTCAGTTTTTGGGGTGCTGAAGCCAACATCAACATGAAGATCATCAGT
Harpalus rubripes genome assembly, chromosome: 11.
OY720459.1:12238677-12238696
ACATGACCTCTGCTACATTAATCGACCGTC12238677TTCTCAGTTTTTGGGGTGCTGTCATATGTTCACTCGGATAGAGGTACTTC
Sequence 22 from patent US 11032984.
MY046312.1:16-35
ATGGGGGTATATCTC16AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
GR__Eb43H16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb43H16 3', mRNA sequence.
CO131267.1:89-108
AATTGCCAACAAGAAATGGGGGTATATCTC89AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
Theobroma cacao, mRNA sequence (KZ0ACP1YA19FM1).
CU496573.1:273-292
GCTGGGCATACATAGATGGGTATATATCTC273AGCACCCCAAAAACTGAGAAATCCTCAGAAGATGGCGAGAATGACAGGGT
Theobroma cacao, mRNA sequence (KZ0AAS9YK01FM1).
CU550128.1:206-225
GCTGGGCATACATAGATGGGTATATATCTC206AGCACCCCAAAAACTGAGAAATCCTCAGAAGATGGCGAGAATGACAGGGT
GH_ON38J06.r GH_ON Gossypium hirsutum cDNA clone GH_ON38J06 3', mRNA sequence.
DT459982.1:71-90
GAAATTAGTCAGGAAATGGGGGTATATCTC71AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
UFL_496_66 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES797266.1:13-32
GGCACGAGTCTC13AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
UFL_190_79 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES811285.1:104-123
GCCAACAATCAGGAAATGGGGGTATATCTC104AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
UFL_349_64 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES820668.1:66-85
GCCAACAATCAGGAAATGGGGGTATATCTC66AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
EST001807 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 08-A03 5', mRNA sequence.
GR708607.1:57-76
AATTGCCAACAAGAAATGGGGGTATATCTC57AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
B05-077B08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799002.1:231-250
GGGAGAAATTAGGAAATGGGGGTATATCTC231AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
B08-77B08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799326.1:240-259
GGGAGAAATTAGGAAATGGGGGTATATCTC240AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
Vitis vinifera, whole genome shotgun sequence, contig VV78X153279.7, clone ENTAV 115.
AM485394.1:16229-16248
ATCGCGCAGCTAGAGATGGGTATATACCTG16229AGCACCCCAAAAACTGAGAAGTTATCTGAGGATGGTGAGAATGGCAGGGT
Gossypioides kirkii chromosome KI_05.
CP032247.1:8360560-8360579
TGGTTTATTCAGGAAATGGGGGTATATCTC8360560AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:9145627-9145646
TGGTTTATTCAGGAAATGGGGGTATATCTC9145627AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
Gossypium herbaceum isolate GPA1alz chromosome 5.
CP106702.1:11679467-11679486
TGGTTTATTCAGGAAATGGGGGTATATCTC11679467AGCACCCCAAAAACTGAGAAGTTATCAGAAGATGGTGAAAATGACAAGCT
Vitis vinifera cultivar Pinot Noir 40024 chromosome 3.
CP126650.1:15382416-15382435
ATCGCGCAGCTAGAGATGGGTATATACCTG15382416AGCACCCCAAAAACTGAGAAGTTATCTGAGGATGGTGAGAATGGCAGGGT
Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128329.1:12779308-12779327
ATCGCGCAGCTAGAGATGGGTATATACCTG12779308AGCACCCCAAAAACTGAGAAGTTATCTGAGGATGGTGAGAATGGCAGGGT
Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128329.1:13216643-13216662
ATCGCGCAGCTAGAGATGGGTATATACCTG13216643AGCACCCCAAAAACTGAGAAGTTATCTGAGGATGGTGAGAATGGCAGGGT
Theobroma cacao isolate Sca6 chromosome 9.
CP139299.1:744913-744932
CAATTGCAGACATAGATGGGTATATATCTC744913AGCACCCCAAAAACTGAGAAATCCTCAGAAGATGGCGAGAATGACAGGGT
Theobroma cacao genome assembly, chromosome: IX.
LT594796.1:748296-748315
CAATTGCAGACATAGATGGGTATATATCTC748296AGCACCCCAAAAACTGAGAAATCCTCAGAAGATGGCGAGAATGACAGGGT
Hedera helix genome assembly, chromosome: 7.
OX359270.1:48799575-48799594
TTCGAACAGTTAAATATGGGGGTATATCTG48799575AGCACCCCAAAAACTGAGAAGGCCTCAGAGGATGGTGAGGATGACAGGCT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737491.1:80535286-80535305
ACTGATGATCATCATGTTGATGTTGGCTTC80535286AGCACCCCAAAAACTGAGAAGAGCCCATCTGCCATGTCCTTCACTGCCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTCAGTTTTTGGGGTGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTCAGTTTTTGGGGTGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.354 | 0.345 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCAGTTTTTGGGGTGCT&k=0&no_gap=0&offset=0&limit=50
1.205 | 0.851 | search_minus_done; http://172.18.8.135:50400/match?q=AGCACCCCAAAAACTGAGAA&k=0&no_gap=0&offset=0&limit=27
1.219 | 0.014 | cgi_end;

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