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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCS10E06, 5' end sequence.
FY449392.1:140-159
GGCTGTTGATGCTCACCATCTCCTTCTCTC140TTCTCCTCAACTCTTCCCCAGCAGAGATTTAATAGTGATGAACAGTAACA
Triticum aestivum genome assembly, chromosome: 5A.
LR862520.1:315409261-315409280
ACTCGAGCTCCAGCGCCCAAGTCCACATCC315409261TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR862541.1:313124046-313124065
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313124046TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR862562.1:313907036-313907055
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313907036TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR865470.1:313228492-313228511
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313228492TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR865491.1:317763943-317763962
ACTCGAGCTCCAGCGCCCAAGTCCACATCC317763943TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR865512.1:317478415-317478434
ACTCGAGCTCCAGCGCCCAAGTCCACATCC317478415TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR865751.1:318292351-318292370
ACTCGAGCTCCAGCGCCCAAGTCCACATCC318292351TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR865772.1:311667362-311667381
ACTCGAGCTCCAGCGCCCAAGTCCACATCC311667362TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR877321.1:316997515-316997534
ACTCGAGCTCCAGCGCCCAAGTCCACATCC316997515TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LR878447.1:316314065-316314084
ACTCGAGCTCCAGCGCCCAAGTCCACATCC316314065TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
LS992092.1:312482001-312482020
ACTCGAGCTCCAGCGCCCAAGTCCACATCC312482001TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum turgidum subsp. durum genome assembly, chromosome: 5A.
LT934119.1:305875257-305875276
ACTCGAGCTCCAGCGCCCAAGTCCACATCC305875257TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OU015733.1:316443648-316443667
ACTCGAGCTCCAGCGCCCAAGTCCACATCC316443648TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OU343173.1:317432622-317432641
ACTCGAGCTCCAGCGCCCAAGTCCACATCC317432622TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OU963884.1:313943556-313943575
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313943556TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OV100749.1:313442202-313442221
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313442202TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OW530322.1:313442202-313442221
ACTCGAGCTCCAGCGCCCAAGTCCACATCC313442202TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum aestivum genome assembly, chromosome: 5A.
OX637237.1:258726618-258726637
ACTCGAGCTCCAGCGCCCAAGTCCACATCC258726618TTCTCCTCAACTCTTCCCCAACATGTCCGGAGCGGGAGGCATGTGGATAG
Triticum timopheevii genome assembly, chromosome: 7G.
OY997274.1:105734311-105734330
CTCATTATAATAAAACTAGACTAGATCATT105734311TTCTCCTCAACTCTTCCCCACAAGCGTCTCTAAGATGACTAGGGTTTTCT
Dasysyrphus albostriatus genome assembly, chromosome: 1.
OX276335.1:183253721-183253740
TGTATTAGGTTTTCGGGGGACGTATCTTAG183253721TTCTCCTCAACTCTTCCCCAGCTGTGCTGATTCCTCTTTGACCGTTTTTC
Meliscaeva auricollis genome assembly, chromosome: 1.
OX403616.1:69638775-69638794
TGGTGTATGGTTTCTGGAAATATATCGTAG69638775TTCTCCTCAACTCTTCCCCAGCCATGTGTTTCTGGGGGACCCGACCCTCT
Heterocephalus glaber genome assembly, chromosome: 4.
OX090912.1:35249382-35249401
ACAGAAAGCAGATTAGTGCTTGCCTGGGGC35249382TGGGGAAGAGTTGAGGAGAAATGGGAAGTGATTGCTGATGGCTATGAGAG
Heterocephalus glaber genome assembly, chromosome: 4.
OX090944.1:85618158-85618177
ACAGAAAGCAGATTAGTGCTTGCCTGGGGC85618158TGGGGAAGAGTTGAGGAGAAATGGGAAGTGATTGCTGATGGCTATGAGAG
Heterocephalus glaber genome assembly, chromosome: 5.
OZ001070.1:32349382-32349401
ACAGAAAGCAGATTAGTGCTTGCCTGGGGC32349382TGGGGAAGAGTTGAGGAGAAATGGGAAGTGATTGCTGATGGCTATGAGAG
Heterocephalus glaber genome assembly, chromosome: 5.
OZ001113.1:32786902-32786921
ACAGAAAGCAGATTAGTGCTTGCCTGGGGC32786902TGGGGAAGAGTTGAGGAGAAATGGGAAGTGATTGCTGATGGCTATGAGAG
Meles meles genome assembly, chromosome: 1.
OV277441.1:184887491-184887510
AGGTGAGTGGGTGAAGGGAGAATGAAAAAC184887491TGGGGAAGAGTTGAGGAGAAACAATAAAGGAATGGGAAGGGAGCTGACGG
Aquila chrysaetos chrysaetos genome assembly, chromosome: 9.
LR606189.1:26818575-26818594
TTGAGTGATCTTAACTCCTCCAATATTGCC26818575TGGGGAAGAGTTGAGGAGAACTACACAATGAAAAATACTGATCAAATAAA
Accipiter gentilis genome assembly, chromosome: 7.
OV839367.1:13174695-13174714
TTGAGTGATCTTAACTCCTCCAATGTTGCC13174695TGGGGAAGAGTTGAGGAGAACTACACAATGAAAAATACTGATCAAATAAA
Haliaeetus albicilla genome assembly, chromosome: 10.
OX381647.1:26786542-26786561
TTGAGTGATCTTAACTCCTCCAATGTTGCC26786542TGGGGAAGAGTTGAGGAGAACTACACAATGAAAAATACCGATCAAATAAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_20640.
FX669639.1:897-916
TGTTACTGTTCATCACTATTAAATCTCTGC897TGGGGAAGAGTTGAGGAGAAGAGAGAAGGAGATGGTGAGCATCAACAGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_23455.
FX793086.1:844-863
TGTTACTGTTCATCACTATTAAATCTCTGC844TGGGGAAGAGTTGAGGAGAAGAGAGAAGGAGATGGTGAGCATCAACAGCC
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:2960193-2960212
AAGAAAGAGATAATCAATAAACGAACCTGC2960193TGGGGAAGAGTTGAGGAGAAGAGAGAAGGAGATGGTGAGCATCAACAGCC
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:898093-898112
AAGAAAGAGATAATCAATAAACGAACCTGC898093TGGGGAAGAGTTGAGGAGAAGAGAGAAGGAGATGGTGAGCATCAACAGCC
Brachypalpus laphriformis genome assembly, chromosome: 2.
OX246754.1:278896415-278896434
GCCGAGCAGTCGAGAAGGAGGCACGGCAGT278896415TGGGGAAGAGTTGAGGAGAACTCAGACATATTGGCAAAAACCATACACGA
Meliscaeva auricollis genome assembly, chromosome: 2.
OX403617.1:1003996-1004015
GCAGGACAGTCGAATTGGAATTTGCACAAC1003996TGGGGAAGAGTTGAGGAGAAATAATATATGTGTAGATGTGTGGAGGAGCT
Parasteatoda lunata genome assembly, chromosome: X1.
OX421980.1:61294003-61294022
CCCTCCTCTCCTGCCAACAGCTACTAAGGT61294003TGGGGAAGAGTTGAGGAGAAGAAAAGTTTTCTCGTTTTATTTATTGTTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTCCTCAACTCTTCCCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTCCTCAACTCTTCCCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.354 | 0.346 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCCTCAACTCTTCCCCA&k=0&no_gap=0&offset=0&limit=50
0.516 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=TGGGGAAGAGTTGAGGAGAA&k=0&no_gap=0&offset=0&limit=28
0.525 | 0.010 | cgi_end;

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