GGGenome | Results

Help | Japanese

2025-03-16 17:32:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Trifolium repens mRNA, clone: WCC01i20_021, unspecified EST.
FY454849.1:121-140

TTTTTTCTGAAAAATGCAGAATCTACACAA121TTCTGCAGATGGAGTACGCTAATTATAGACCCATTTTTTCCCTTCTTGTT

Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:14338538-14338557

TTTTTTCTGAAAAATGCAGAATCTACACAA14338538TTCTGCAGATGGAGTACGCTAATCATAGGCCCATTTTTTCCCTTCTTGTT

Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:16438032-16438051

TTTTTTCTGAAAAATGCAGAATCTACACAA16438032TTCTGCAGATGGAGTACGCTAATTATAGACCCATTTTTTCCCTTCTTGTT

Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:17872493-17872512

TTTTTCCAGAAAAATGCAGAATCTACACAA17872493TTCTGCAGATGGAGTACGCTAATAATAGGCCCATTTTTTCCCTTCTTGTT

Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:38541678-38541697

AACAAGAAGGGAAAAAATGGGTCTATTATT38541678AGCGTACTCCATCTGCAGAATTTAGTAGATTCTGCATTTTTCAGAAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.200 | 0.191 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTGCAGATGGAGTACGCT&k=0&no_gap=0&offset=0&limit=50
0.246 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=AGCGTACTCCATCTGCAGAA&k=0&no_gap=0&offset=0&limit=46
0.246 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).