GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-17 16:15:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens mRNA, clone: WCC01i20_021, unspecified EST.
FY454849.1:121-140
TTTTTTCTGAAAAATGCAGAATCTACACAA121TTCTGCAGATGGAGTACGCTAATTATAGACCCATTTTTTCCCTTCTTGTT
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:14338538-14338557
TTTTTTCTGAAAAATGCAGAATCTACACAA14338538TTCTGCAGATGGAGTACGCTAATCATAGGCCCATTTTTTCCCTTCTTGTT
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:16438032-16438051
TTTTTTCTGAAAAATGCAGAATCTACACAA16438032TTCTGCAGATGGAGTACGCTAATTATAGACCCATTTTTTCCCTTCTTGTT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:17872493-17872512
TTTTTCCAGAAAAATGCAGAATCTACACAA17872493TTCTGCAGATGGAGTACGCTAATAATAGGCCCATTTTTTCCCTTCTTGTT
Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:38541678-38541697
AACAAGAAGGGAAAAAATGGGTCTATTATT38541678AGCGTACTCCATCTGCAGAATTTAGTAGATTCTGCATTTTTCAGAAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTGCAGATGGAGTACGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTGCAGATGGAGTACGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTGCAGATGGAGTACGCT&k=0&no_gap=0&offset=0&limit=50
0.217 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=AGCGTACTCCATCTGCAGAA&k=0&no_gap=0&offset=0&limit=46
0.218 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).