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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:18:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS09_4E01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-4E01-I1-1-4.b, mRNA sequence.
CX053185.1:715-734
AACTCGGGGTTAGTTGGGAGCTTGTAGAGA715TTCTGGGCTGGTAGGTTCAGCTCGGCGTACGGGTTGTAGAGACGGGTTTC
UCRCS09_4E01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-4E01-I1-1-5.g, mRNA sequence.
CX053186.1:155-174
GAAACCCGTCTCTACAACCCGTACGCCGAG155CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACTAACCCCGAGTT
KN0AAP3YO05FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY261741.1:134-153
GAAACCCGTCTCTACAACCCGTACGCCGAG134CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA45BD08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY277977.1:120-139
GAAACCCGTCTCTACAACCCGTACGCCGAG120CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA59BG05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY283416.1:224-243
GAAACCCGTCTCTACAACCCGTACGCCGAG224CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA96CB11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY298792.1:152-171
GAAACCCGTCTCTACAACCCGTACGCCGAG152CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA96CB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96CB11, mRNA sequence.
FC884229.1:152-171
GAAACCCGTCTCTACAACCCGTACGCCGAG152CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA59BG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA59BG05, mRNA sequence.
FC902094.1:224-243
GAAACCCGTCTCTACAACCCGTACGCCGAG224CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
IC0AAA45BD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA45BD08, mRNA sequence.
FC902252.1:120-139
GAAACCCGTCTCTACAACCCGTACGCCGAG120CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
KN0AAP3YO05FM1 TF Citrus clementina cDNA clone KN0AAP3YO05, mRNA sequence.
FC925779.1:134-153
GAAACCCGTCTCTACAACCCGTACGCCGAG134CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACCAACCCCGAGTT
Citrus sinensis genome assembly, chromosome: 4.
OY754321.1:23389588-23389607
GAAACCCGTCTCTACAACCCGTACGCCGAG23389588CTGAACCTACCAGCCCAGAATCTCTACAAGCTCCCAACTAACCCCGAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTGGGCTGGTAGGTTCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTGGGCTGGTAGGTTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTGGGCTGGTAGGTTCAG&k=0&no_gap=0&offset=0&limit=50
0.572 | 0.445 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAACCTACCAGCCCAGAA&k=0&no_gap=0&offset=0&limit=49
0.578 | 0.006 | cgi_end;

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