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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 21:01:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_18878.
FX702992.1:1025-1044
GTATTTAGAGCAAGCAATCGATCATAAGGG1025TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGAAGGAGAGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17424.
FX743358.1:964-983
GTATCTAGAGCAAGCAATCGATCATAAGGG964TTCTGTGCATCCAAATCTCGAGAAGAATGAGAAGAAGAAGAAGCAGAGCC
TSA: Raphanus sativus RS22486 mRNA sequence.
JT807033.1:1092-1111
GTATCTAGAGCAAGCAATCGATCATAAGGG1092TTCTGTGCATCCAAATCTCGAGAAGAATGAGAAGAAGAAGAAGCAGAGCC
oep84e03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ034537.1:407-426
GCATTTAGAGCAAGCAATCGATCATAACGG407TTCTGTGCATCCAAATCTCGAGAAGAAGAGGAAGAAGCAGAGCCATCGTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033I20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241012.1:18665-18684
GTATTTAGAGCAAGCAATCGATCATAAGGG18665TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGAAGGAGAGCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
AC232450.1:127849-127868
GTATTTAGAGCAAGCAATCGATCATAAGGG127849TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGAAGGAGAGCC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:2167327-2167346
GTATTTAGAGCAAGCAATCGATCATAAGGG2167327TTCTGTGCATCCAAATCTCGAGAAGAAGAGGAAGAAGCAGAGCCATCGTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:2184468-2184487
GTATTTAGAGCAAGCAATCGATCATAATGG2184468TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGGAGAGCCATC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:2986806-2986825
GCATTTAGAGCAAGCAATCGATCATAACGG2986806TTCTGTGCATCCAAATCTCGAGAAGAAGAGGAAGAAGCAGAGCCATCGTC
Brassica rapa genome, scaffold: A03.
LR031572.1:2110688-2110707
GTATTTAGAGCAAGCAATCGATCATAAGGG2110688TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGAAGGAGAGCC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:2932563-2932582
GCATTTAGAGCAAGCAATCGATCATAACGG2932563TTCTGTGCATCCAAATCTCGAGAAGAAGAGGAAGAAGCAGAGCCATCGTC
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:2079710-2079729
GTATCTAGAGCAAGCAATCGATCATAAGGG2079710TTCTGTGCATCCAAATCTCGAGAAGAATGAGAAGAAGAAGAAGCAGAGCC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:2111548-2111567
GTATTTAGAGCAAGCAATCGATCATAAGGG2111548TTCTGTGCATCCAAATCTCGAGAAGAAGAAGAAGAAGAAGAAGGAGAGCC
Candidatus Poribacteria bacterium isolate 9fae2ea3-c9b7-404b-9456-b4c0b6541956 genome assembly, chromosome: 1.
OY764016.1:3837195-3837214
GAAATTATTGGGGTGTCCGTTGCTGGGCAC3837195CGAGATTTGGATGCACAGAATATTAATTTTGCTATACCGTCAAATTATCT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a007D01_T7.
AM389360.1:160-179
GACGATGGCTCTGCTTCTTCCTCTTCTTCT160CGAGATTTGGATGCACAGAACCGTTATGATCGATTGCTTGCTCTAAATGC
Thellungiella halophila cDNA clone: RTFL01-07-N10, 5'end sequence.
BY805073.1:234-253
TTAATGGAAGACGATGACTCTGCTTCTTCT234CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAGATAC
Brassica rapa subsp. pekinensis mRNA, clone: BRest03-E05, 5'-end sequence.
DC844645.1:187-206
GACGATGGCTCTGCTTCTTCCTCTTCTTCT187CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
24RDBNH_UP_058_F04_01NOV2005_022 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE508643.1:159-178
GGCTCTCCTTCTTCTTCTTCTTCTTCTTCT159CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
0088653 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV191172.1:231-250
GACGATGGCTCTGCTTCTTCCTCTTCTTCT231CGAGATTTGGATGCACAGAACCGTTATGATCGATTGCTTGCTCTAAATGC
BR004457 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-033D03 5', mRNA sequence.
EX019813.1:13-32
TCTTCTTCTTCT13CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
BR005453 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-046G10 5', mRNA sequence.
EX020809.1:161-180
GGCTCTCCTTCTTCTTCTTCTTCTTCTTCT161CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
BR094962 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-033G05 5', mRNA sequence.
EX108672.1:228-247
GGCTCTCCTTCTTCTTCTTCTTCTTCTTCT228CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
RR3BV71TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX762761.1:197-216
GGTTCTGCTTCTTCTTCTTCCCATTCTTCT197CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAGATAC
RR3DS33TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915270.1:197-216
GGTTCTGCTTCTTCTTCTTCCCATTCTTCT197CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAGATAC
Raphanus sativus mRNA, clone: RSCS15F17, 5' end sequence.
FY451208.1:184-203
TCTGCTTCTTCTTCTTCTTCTCATTCTTCT184CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
BNAOV1GH_T3_113_F03_22SEPT2007_021 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR445966.1:177-196
GACGATGGCTCTGCTTCTTCCTCTTCTTCT177CGAGATTTGGATGCACAGAACCGTTATGATCGATTGCTTGCTCTAAATGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13112.
FX664768.1:144-163
TCTGCTTCTTCTTCTTCTTCTCATTCTTCT144CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
BONLX22TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONLX22, genomic survey sequence.
BZ473727.1:679-698
GACGATGGCTCTGCTTCTTCCTCTTCTTCT679CGAGATTTGGATGCACAGAACCGTTATGATCGATTGCTTGCTCTAAATGC
Brassica rapa subsp. pekinensis clone KBrH088C05, complete sequence.
CU914556.1:102500-102519
GGCTCTCCTTCTTCTTCTTCTTCTTCTTCT102500CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAAATAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:76219185-76219204
GACGATGGCTCTGCTTCTTCCTCTTCTTCT76219185CGAGATTTGGATGCACAGAACCGTTATGATCGATTGCTTGCTCTAAATGC
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:65918345-65918364
GAAGACGATGACTCAGTCTCCGCTGCTTCT65918345CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAGATAC
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:33442572-33442591
GGCTCTGCTTCTTCTTCTTCTCATTCTTCT33442572CGAGATTTGGATGCACAGAACCCTTATGATCGATTGCTTGCTCTAGATAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTGTGCATCCAAATCTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTGTGCATCCAAATCTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.327 | 0.318 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTGTGCATCCAAATCTCG&k=0&no_gap=0&offset=0&limit=50
1.166 | 0.839 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGATTTGGATGCACAGAA&k=0&no_gap=0&offset=0&limit=37
1.178 | 0.012 | cgi_end;

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